Chapter 09

Useful Software

RDP (Ribosomal Database Project)
Full list of 16S ribosomal RNA sequences.
http://rdp.cme.msu.edu/

European ribosomal RNA database
A wide range of small subunit ribosomal RNA sequences.
http://www.psb.ugent.be/rRNA

PRIMROSE
A program for generating oligonucleotide primers and probes for 16S ribosomal genes.
http://nar.oxfordjournals.org/cgi/content/full/30/15/3481

PROBEBASE
Oligonucleotide probes targeting ribosomal RNAs.
http://www.microbial-ecology.de/probebase