Beebee & Rowe: An Introduction to Molecular Ecology: 2e 
Hyperlinked bibliography
Figures from the bookBeebee & Rowe: An Introduction to Molecular Ecology: 2e
References: T to Z
Please note that some of the sites you will be directed to from this page require a username and password to access the article.
T
Taberlet, P. and Cheddaki, R. (2002) Quaternary refugia and persistence of biodiversity. Science, 297, 2009-2010. [DOI: 10.1126/science.297.5589.2009]
Taberlet, P. and Luikart, G. (1999) Non-invasive genetic sampling and individual identification. Biological Journal of the Linnean Society, 68, 41-55. [DOI: 10.1006/bijl.1999.0329]
Taberlet, P., Fumagalli, L., Wust-Saucy, A.-G. and Cosson, J.-F. (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453-464. [PubMed: 9628000] [DOI: 10.1046/j.1365-294x.1998.00289.x]
Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595. [PubMed: 2513255]
Takezaki, N. and Nei, M. (1996) Genetic MtDNA 16S primers. Genetics, 144, 389-399. [PubMed: 8878702]
Tallmon, D. A., Luikart, G. and Waples, R. S. (2004) The alluring simplicity and complex reality of genetic rescue. Trends in Ecology and Evolution, 19, 489-496. [PubMed: 16701312] [DOI: 10.1016/j.tree.2004.07.003]
Tautz, D. (1989) Hypervariability of simple sequences as a general source for polymorphic DNA markers. Nucleic Acids Research, 17, 6463-6471. [PubMed: 2780284] [DOI: 10.1093/nar%2F17.16.6463]
Tegelstrom, H. (1992) Detection of mitochondrial DNA fragments. In: Molecular Genetic Analysis of Populations: A Practical Approach (Hoelzel, A. R.). IRL at Oxford University Press, Oxford, UK, pp. 89-114.
Templeton, A. R. (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381-397. [PubMed: 9627999] [DOI: 10.1046/j.1365-294x.1998.00308.x]
Thomas, C. M. and Nielsen, K. M. (2005) Mechanisms of, and barriers to, horizontal gene transfer between bacteria. Nature Reviews Microbiology, 3, 711-721. [PubMed: 16138099] [DOI: 10.1038/nrmicro1234]
Thomas, W. K., Pääbo, S., Villablanca, F. X. and Wilson, A. C. (1990) Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens. Journal of Molecular Evolution, 31, 101-112. [DOI: 10.1007/BF02109479]
Thomson, N., Bentley, S., Holden, M. and Parkhill, J. (2003) Genome watch - fitting the niche by genomic adaptation. Nature Reviews, Microbiology, 1, 92-93. [DOI: 10.1038/nrmicro756]
Thursz, H. C., Greenwood, B. M. and Hill, A. V. S. (1997) Heterozygote advantage for HLA class-II type in Hepatitis B virus infection. Nature Genetics, 17, 11-12. [PubMed: 9288086] [DOI: 10.1038/ng0997-11]
Thusius, K. J., Dunn, P. O., Peterson, K. A. and Whittingham, L. A. (2001) Extrapair paternity is influenced by breeding synchrony and density in the common yellowthroat. Behavioral Ecology, 12, 5, 633-639. [DOI: 10.1093/beheco%2F12.5.633]
Tinbergen, N. (1958) Curious Naturalists. Doubleday Publishing, Garden City, New York.
Torsvik, V. L., Goksøyr, J. and Daae, F. L. (1990) High diversity in DNA of soil bacteria. Applied and Environmental Microbiology, 56, 782-787.
Tringe, S. G., von Mering, C., Kobayashi, A., Salamov, A. A., Chen, K., Chang, H. W. et al. (2005) Comparative metagenomics of microbial communities. Science, 308, 554-557. [DOI: 10.1126/science.1107851]
Trivers, R. L. (1972) Parental investment and sexual selection. In: Sexual Selection and the Descent of Man 1871-1971 (Campbell, B. ed.). Aldine Publishing Co., Chicago, IL, pp. 136-179.
Tschentscher, F. (1999) Too mammoth an undertaking. Science, 286, 2084. [PubMed: 10617418] [DOI: 10.1126/science.286.5447.2083c]
Turgeon, J. and Bernatchez, L. (2001) Mitochondrial DNA phylogeography of lake cisco (Coregonus artedi): evidence supporting extensive secondary contacts between two glacial races. Molecular Ecology, 10, 987-1001. [PubMed: 11348505] [DOI: 10.1046/j.1365-294X.2001.01248.x]
Tzedakis, P. C., Lawson, I. T., Frogley, M. R., Hewitt, G. M. and Preece, R. C. (2002) Buffered tree population changes in a quaternary refugium: evolutionary implications. Science, 297, 2044-2047. [PubMed: 12242441] [DOI: 10.1126/science.1073083]
Tzuri, G., Hillel, J., Lavi, U., Haberfeld, A. and Vainstein, A. (1991) DNA fingerprint analysis of ornamental plants. Plant Science, 76, 91-97. [DOI: 10.1016/0168-9452%2891%2990222-T]
U
Urbani, N., Sainte-Marie, B., Sévigny, J.-M., Zadworny, D. and Kuhnlein, U. (1998) Sperm competition and paternity assurance during the first breeding period of female snow crab (Chionoecetes opilio) (Bracyura: Majidae). Canadian Journal of Fishery and Aquatic Science, 55, 1104-1113.
V
Valière, N. (2002) GIMLET: a computer program for analyzing genetic individual identification data. Molecular Ecology Notes, 2, 377-379. [DOI: 10.1046/j.1471-8286.2002.00228.x]
Van Straalen, N. M. and Roelofs, D. (2006) Ecological Genomics. Oxford University Press, Oxford.
Venter, J. C., Adams, M. D., Myers, E. W., Li, P. W., Mural, R. J., Sutton, G. G. et al. (2001) The sequence of the human genome. Science, 291, 1304-1309. [PubMed: 11181995] [DOI: 10.1126/science.1058040]
Venter, J. C., Remington, K., Heidelberg, J. F. et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science, 304, 66-74. [PubMed: 15001713] [DOI: 10.1126/science.1093857]
Vignien, S. N. (2005) Streams over mountains: influence of riparian connectivity on gene flow in the Pacific jumping mouse (Zapus trinotatus). Molecular Ecology, 14, 1925-1937. [DOI: 10.1111/j.1365-294X.2005.02568.x]
Vil"C., Sundqvist, A.-K., Flagstad, O., Seddon, J., Bjornerfeldt, S., Kojola, I. et al. (2003) Rescue of a severely bottlenecked wolf (Canus lupus) population by a single immigrant. Proceedings of the Royal Society of London B, 270, 91-97. [DOI: 10.1098/rspb.2002.2184]
Vines, T. H., Kohler, S. C., Thiel, M., Ghira, I., Sands, T. R., MacCallum, C. J., Barton, N. H. and Nurnberger, B. (2003) The maintenance of reproductive isolation in a mosaic hybrid zone between the fire-bellied toads Bombina bombina and B. variegata. Evolution, 57, 1876-1888. [DOI: 10.1554/02-512]
Visscher, P. M., Smith, D., Hall, S. J. G. and Williams, J. A. (2001) A viable herd of genetically uniform cattle. Nature, 409, 303. [PubMed: 11201728] [DOI: 10.1038/35053160]
Volis, S., Yakubov, B., Shulgina, I., Ward, D., Zur, V. and Medlinger, S. (2001) Tests for adaptive RAPD variation in population genetic structure of wild barley, Hordeum spontaneum Koch. Biological Journal of the Linnean Society, 74, 289-303. [DOI: 10.1006/bijl.2001.0569]
Vos, P., Hogers, R., Bleeker, M., Reijans, M., Vandeleet, T., Hornes, M. et al. (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research, 23, 4407-4414. [DOI: 10.1093/nar%2F23.21.4407]
Vucetich, J. A. and Waite, T. A. (2001) Migration and inbreeding: the importance of recipient population size for genetic management. Conservation Genetics, 2, 167-171. [DOI: 10.1023/A%3A1011850907551]
W
Walsh, P. S., Metzger, D. A. and Higuchi, R. (1991) Chelex R 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. Biotechniques, 10, 506-513. [PubMed: 1867860]
Wang, J. (2005) Estimations of effective population sizes from data on genetic markers. Philosophical Transactions of the Royal Society B, 360, 1395-1409. [DOI: 10.1098/rstb.2005.1682]
Waples, R. S. (1989) A generalised approach for estimating effective population size from temporal changes in allele frequency. Genetics, 121, 379-391. [PubMed: 2731727]
Waples, R. S. and Gaggiotti, O. (2006) What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity. Molecular Ecology, 15, 1419-1439. [PubMed: 16629801] [DOI: 10.1111/j.1365-294X.2006.02890.x]
Wares, J. P., Goldwater, D. S., Kong, B. Y. and Cunningham, C. W. (2002) Refuting a controversial case of a human-mediated marine species introduction. Ecology Letters, 5, 577-584. [DOI: 10.1046/j.1461-0248.2002.00359.x]
Waser, P. M. and Strobeck, C. (1998) Genetic signatures of interpopulation dispersal. Trends in Ecology and Evolution, 13, 43-44. [DOI: 10.1016/S0169-5347%2897%2901255-X]
Watson, J. D. and Crick, F. H. C. (1953a) Molecular structure of nucleic acids: a structure for deoxyribose nucleic acid. Nature, 171, 737-738. [PubMed: 13054692] [DOI: 10.1038/171737a0]
Watson, J. D. and Crick, F. H. C. (1953b) Genetical implications of the structure of deoxyribonucleic acid. Nature, 171, 964-967. [PubMed: 13063483] [DOI: 10.1038/171964b0]
Watts, P. C., Thompson, D. J., Daguet, C. and Kemp, S. J. (2005) Exuviae as a reliable source of DNA for population-genetic analysis of odonates. Odonatologica, 34, 183-187.
Waugh, R., Leader, D. J., McCallum, N. and Caldwell, D. (2006) Harvesting the potential of induced biological diversity. Trends in Plant Science, 11, 71-79. [DOI: 10.1016/j.tplants.2005.12.007]
Wayne, R. K., Leonard, J. A. and Cooper, A. (1999) Full of sound and fury: the recent history of ancient DNA. Annual Review of Ecology and Systematics, 30, 457-477. [DOI: 10.1146/annurev.ecolsys.30.1.457]
Weber, J. L. and May, P. E. (1989) Abundant class of human DNA polymorphism which can be typed using the polymerase chain reaction. American Journal of Human Genetics, 44, 388-396. [PubMed: 2916582]
Wedekind, C. (2002) Manipulating sex ratios for conservation: short-term risks and long-term benefits. Animal Conservation, 5, 13-20.
Wedekind, C. and Furi, S. (1997) Body odour preferences in men and women: do they aim for specific MHC combinations or simply heterozygosity? Proceedings of the Royal Society of London Series B, 264, 1471-1479. [PubMed: 9364787] [DOI: 10.1098/rspb.1997.0204]
Wedekind, C., Seebeck, T., Bettens, F. and Paepke, A. J. (1995) MHC-dependent mate preferences in humans. Proceedings of the Royal Society of London Series B, 260, 245-249. [PubMed: 7630893] [DOI: 10.1098/rspb.1995.0087]
Wedell, N., Kvarnemo, C., Lessells, C. M. and Tregenza, T. (2006) Sexual conflict and life histories. Animal Behaviour, 71, 999-1011. [DOI: 10.1016/j.anbehav.2005.06.023]
Weinberg, W. (1908) "er den nachweis der vererbung beim menschen. Jh. Ver. vaterl Naturk. Württemb., 64, 369-382.
Weir, B. S. (1996) Genetic Data Analysis II. Sinauer Associates, Sunderland, Massachusetts.
Welsh, J. and McClelland, M. (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research, 18, 7213-7218. [DOI: 10.1093/nar%2F18.24.7213]
West-Eberhard, M. J. (1989) Phenotypic plasticity and the origins of diversity. Annual Review of Ecology and Systematics, 20, 249-278. [DOI: 10.1146/annurev.es.20.110189.001341]
Westerhoff, H. V. and Palsson, B. O. (2004) The evolution of molecular biology into systems biology. Nature Biotechnology, 22, 1249-1252. [PubMed: 15470464] [DOI: 10.1038/nbt1020]
Wetton, J. H., Carter, R. E., Parkin, D. T. and Walters, D. (1987) Demographic study of a wild house sparrow population by DNA fingerprinting. Nature, 327, 147-149. [PubMed: 3574474] [DOI: 10.1038/327147a0]
Whang, J. and Whitlock, M. (2003) Estimating effective population size and migration rates from genetic samples over space and time. Genetics, 163, 429-446.
Whitehead, A. and Crawford, D. L. (2006) Variation within and among species in gene expression: raw material for evolution. Molecular Ecology, 15, 1197-1211. [PubMed: 16626448] [DOI: 10.1111/j.1365-294X.2006.02868.x]
Whitlock, M. C. and McCauley, D. E. (1999) Indirect measures of gene flow and migration: Fst ≠ 1/(4Nm +1). Heredity, 82, 117-125. [DOI: 10.1038/sj.hdy.6884960]
Wilbur, H. M. (1987) Regulation of structure in complex systems: experimental temporary pond communities. Ecology, 68, 1437-1452. [DOI: 10.2307/1939227]
Wildt, D. E. and Wemmer, C. (1999) Sex and wildlife: the role of reproductive science in conservation. Biodiversity and Conservation, 8, 965-976. [DOI: 10.1023/A%3A1008813532763]
Wilkinson, M. J., Davenport, I. J., Charters, Y. M., Jones, A. E., Allainguillaume, J., Butler, H. T. et al. (2000) A direct regional scale estimate of transgene movement from genetically modified oilseed rape to its wild progenitors. Molecular Ecology, 9, 983-991. [PubMed: 10886660] [DOI: 10.1046/j.1365-294x.2000.00986.x]
Wilkinson, M. J., Elliott, L. J., Allainguillaume, J., Shaw, M. W., Norris, C., Welters, R. et al. (2003) Hybridisation between Brassica napus and B. rapa on a national scale in the United Kingdom. Science, 302, 457-459. [PubMed: 14551318] [DOI: 10.1126/science.1088200]
Williams, J. G. K., Kubelik, A. R., Livak, K. J., Rafalski, J. A. and Tingey, S. V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research, 18, 6531-6535. [PubMed: 1979162] [DOI: 10.1093/nar%2F18.22.6531]
Williamson, M. (1992) Environmental risks from the release of genetically modified organisms (GMOs)-the need for molecular ecology. Molecular Ecology, 1,3-8.
Williamson, M. and Brown, K. (1986) The analysis and modeling of British invasions. Philosophical Transactions of the Royal Society B, 314, 505-522. [DOI: 10.1098/rstb.1986.0070]
Williamson-Natesan, E. G. (2005) Comparison of methods for detecting bottlenecks from microsatellite loci. Conservation Genetics, 6, 551-562. [DOI: 10.1007/s10592-005-9009-5]
Wilmut, I., Schnieke, A. E., McWhir, J., Kind, A. J. and Campbell, K. H. S. (1997) Viable offspring derived from fetal and adult mammalian cells. Nature, 385, 810-813. [DOI: 10.1038/385810a0]
Wilson, A. C., Carlson, S. S. and White, T. J. (1977) Biochemical evolution. Annual Review of Biochemistry, 46, 573-639. [PubMed: 409339] [DOI: 10.1146/annurev.bi.46.070177.003041]
Wilson, G. A. and Rannala, B. (2003) Bayesian inference of recent migration rates using multilocus genotypes. Genetics, 163, 1177-1191. [PubMed: 12663554]
Wirth, T. and Bernatchez, L. (2001) Genetic evidence against panmixia in the European eel. Nature, 409, 1037-1040. [PubMed: 11234011] [DOI: 10.1038/35059079]
Woese, C. R. and Fox, G. E. (1977) Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proceedings of the National Academy of Sciences of the USA, 74, 5088-5090. [PubMed: 270744] [DOI: 10.1073/pnas.74.11.5088]
Wolfe, K. H., Li, W. H. and Sharp, P. M. (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast and nuclear DNAs. Proceedings of the National Academy of Sciences of the USA, 84, 9054-9058. [PubMed: 3480529] [DOI: 10.1073/pnas.84.24.9054]
Wong, A. L.-C., Beebee, T. J. C. and GriAths, R. A. (1994) Factors affecting the distribution and abundance of an unpigmented heterotrophic alga Prototheca richardsi. Freshwater Biology, 32, 33-38. [DOI: 10.1111/j.1365-2427.1994.tb00863.x]
Wong, Z., Wilson, V., Patel, I., Povey, S. and Jeffreys, A. J. (1987) Characterization of a panel of highly variable minisatellites cloned from human DNA. Annals of Human Genetics, 51, 269-288. [PubMed: 3482146] [DOI: 10.1111/j.1469-1809.1987.tb01062.x]
Wright, M. F. and Guttman, S. I. (1995) Lack of association between heterozygosity and growth rate in the wood frog, Rana sylvatica. Canadian Journal of Zoology, 73, 569-575.
Wright, S. (1931) Evolution in Mendelian populations. Genetics, 16, 97-159; Wright, S. (1951) The genetical structure of populations. Annals of Eugenics, 15, 323-354.
Wu, L., Thompson, D. K., Li, G., Hurt, R. A., Tiedje, J. M. and Zhou, J. (2001) Development and evaluation of functional gene arrays for detection of selected genes in the environment. Applied and Environmental Microbiology, 67, 5780-5790. [PubMed: 11722935] [DOI: 10.1128/AEM.67.12.5780-5790.2001]
Wycherley, J., Doran, S. and Beebee, T. J. C. (2002) Frog calls echo microsatellite phylogeography in the European pool frog Rana lessonae. Journal of Zoology (London), 258, 479-484. [DOI: 10.1017/S0952836902001632]
Wynne-Edwards, V. C. (1962) Animal Dispersion in Relation to Social Behaviour. Oliver& Boyd, Edinburgh.
X
Xu, J. (2006) Microbial ecology in the age of genomics and metagenomics: concepts, tools and recent advances. Molecular Ecology, 15, 1713-1731. [PubMed: 16689892] [DOI: 10.1111/j.1365-294X.2006.02882.x]
Y
Yuhki, N. and O'Brien, S. J. (1990) DNA variation of the mammalian major histocompatibility complex reflects genomic diversity and population history. Proceedings of the National Academy of Sciences of the USA, 87, 836-840. [DOI: 10.1073/pnas.87.2.836]
Z
Zaid, A., Crandall, K. A. and Paul, J. (2004) Evaluating the performance of likelihood methods for detecting population structure and migration. Molecular Ecology, 13, 837-851. [DOI: 10.1111/j.1365-294X.2004.02132.x]
Zane, L., Bargelloni, L. and Patarnello, T. (2002) Strategies for microsatellite isolation: a review. Molecular Ecology, 11, 1-16. [PubMed: 11903900] [DOI: 10.1046/j.0962-1083.2001.01418.x]
Zangelr, A. R., McKenna, D., Wraight, C. L., Carroll, M., Ficarello, P., Warner, R. and Berenbaum, M. R. (2001) Effects of exposure to event 176 bacillus Thuringiensis corn pollen on monarch and black swallow-tail caterpillars under field conditions. Procceedings of the National Academy of Sciences USA, 98, 11908-11912. [DOI: 10.1073/pnas.171315698]
Zeh, J. A. and Zeh, D. W. (1994) Last-male sperm precedence breaks down when females mate with three males. Proceedings of the Royal Society of London B, 257, 287-292. [DOI: 10.1098/rspb.1994.0127]
Zeh, J. A. and Zeh, D. W. (1996) The evolution of polyandry I: intragenomic conflict and genetic compatibility. Proceedings of the Royal Society of London B, 263, 1711-1717. [DOI: 10.1098/rspb.1996.0250]
Zeh, J. A. and Zeh, D. W. (1997) The evolution of polyandry II: post-copulatory defences against genetic compatibility. Proceedings of the Royal Society of London B, 264, 69-75. [DOI: 10.1098/rspb.1997.0010]
Zeisset, I. and Beebee, T. J. C. (2001) Determination of biogeographical range: an application of molecular phylogeography to the European pool frog Rana lessonae. Proceedings of the Royal Society of London B, 268, 933-938. [DOI: 10.1098/rspb.2001.1600]
Zenuto, R. R., Lacey, E. A. and Busch, C. (1999) DNA fingerprinting reveals polygyny in the subterranean rodent Ctenomys talarum. Molecular Ecology, 8, 1529-1532. [PubMed: 10564459] [DOI: 10.1046/j.1365-294x.1999.00715.x]
Zhang, D.-X. and Hewitt, G. M. (1996) Nuclear integrations: challenges for mitochondrial DNA markers. Trends in Ecology and Evolution, 11, 247-251. [DOI: 10.1016/0169-5347%2896%2910031-8]
Zhivotovsky, L. A. (1999) Estimating population structure in diploids with multilocus dominant DNA markers. Molecular Ecology, 8, 907-913. [PubMed: 10434412] [DOI: 10.1046/j.1365-294x.1999.00620.x]
Zhou, J. (2003) Microarrays for bacterial detection and microbial community analysis. Current Opinions in Microbiology, 6, 288-294. [DOI: 10.1016/S1369-5274%2803%2900052-3]
Zink, R. M., Blackwell-Rago, R. C. and Ronquist, F. (2000) The shifting roles of dispersal and vicariance in biogeography. Proceedings of the Royal Society of London B, 267, 497-503. [DOI: 10.1098/rspb.2000.1028]
Zuckerkandl, E. and Pauling, L. (1965) Evolutionary divergence and convergence in proteins. In: Evolving Genes and Proteins (Bryson, V. and Vogel, H. J. eds). Academic Press, New York, pp. 97-166.
View print version