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• Beebee & Rowe: An Introduction to Molecular Ecology: 2e

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  • References: A to F
  • References: G to M
  • References: N to S
  • References: T to Z
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Beebee & Rowe: An Introduction to Molecular Ecology: 2e

References: N to S

N - O - P - Q - R - S

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N

• Neel, M. C. and Cummings, M. P. (2003) Genetic consequences of ecological reserve design guidelines: an empirical investigation. Conservation Genetics, 4, 427-439. [DOI: 10.1023/A%3A1024758929728]

• Neigel, J. E. (2002) Is Fst obsolete? Conservation Genetics, 3, 167-173. [DOI: 10.1023/A%3A1015213626922]

• Newcomer, S. D., Zeh, J. A. and Zeh, D. W. (1999) Genetic benefits enhance the reproductive success of polyandrous females. Proceedings of the National Academy of Science of the USA, 96, 10236-10241. [DOI: 10.1073/pnas.96.18.10236]

• Nielsen, K. M., Bones, A. M., Smalla, K. and van Elsas, J. D. (1998) Horizontal gene transfer from transgenic plants to terrestrial bacteria - a rare event? FEMS Microbiology Reviews, 22, 79-103. [PubMed: 9729765] [DOI: 10.1111/j.1574-6976.1998.tb00362.x]

• Nielsen, K. M., van Elsas, J. D. and Smalla, K. (2001) Dynamics, horizontal transfer and selection of novel DNA in bacterial populations in the phytosphere of transgenic plants. Annals of Microbiology, 51, 79-94.

• Noonan, B. P. and Wray, K. P. (2006) Neotropical diversification: the effects of a complex history on diversity within the poison frog genus Dendrobates. Journal of Biogeography, 33, 1007-1020. [DOI: 10.1111/j.1365-2699.2006.01483.x]

• Noro, M., Masuda, R., Dubrovo, I. A., Yoshida, M. C. and Kato, M. (1998) Molecular phylogenetic inference of the woolly mammoth Mammuthus primigenius, based on complete sequences of mitochondrial cytochrome b and 12S ribosomal RNA genes. Journal of Molecular Evolution, 46, 314-326. [PubMed: 9493356] [DOI: 10.1007/PL00006308]

• Nurnberger, B., Barton, N. H., Kruuk, L. E. B. and Vines, T. H. (2005) Mating patterns in a hybrid zone of fire-bellied toads (Bombina): inferences from adult and full-sib genotypes. Heredity, 94, 247-257. [PubMed: 15536484] [DOI: 10.1038/sj.hdy.6800607]

• Nurnberger, B., Barton, N., MacCallum, C., Gilchrist, J. and Appleby, M. (1995) Natural selection on quantitative traits in the Bombina hybrid zone. Evolution, 49, 1224-1238. [DOI: 10.2307/2410447]

• Nybom, H. and Schaal, B. A. (1990) DNA 'fingerprints' applied to paternity analysis in apples (Malux x domestica). Theoretical and Applied Genetics, 79, 763-768. [DOI: 10.1007/BF00224242]

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O

• O'Brien, S. J., Roelke, M. E., Marker, L., Newman, A., Winkler, C. A., Meltzer, D. et al. (1985) Genetic basis for species vulnerability in the cheetah. Science, 227, 1428-1434. [DOI: 10.1126/science.2983425]

• O'Brien, S. J., Wildt, D. E., Goldman, D., Merril, C. R. and Bush, M. (1983) The cheetah is depauperate in genetic variation. Science, 221, 459-462. [DOI: 10.1126/science.221.4609.459]

• O'Ryan, C., Harley, E. H., Bruford, M. W., Beaumont, M., Wayne, R. K. and Cherry, M. I. (1998) Microsatellite analysis of genetic diversity in fragmented South African buffalo populations. Animal Conservation, 1, 85-94. [DOI: 10.1111/j.1469-1795.1998.tb00015.x]

• Ochman, H., Lawrence, J. G. and Groisman, E. A. (2000) Lateral gene transfer and the nature of bacterial innovation. Nature, 405, 299-304. [PubMed: 10830951] [DOI: 10.1038/35012500]

• Ohta, T. (1992) The nearly neutral theory of molecular evolution. Annual Review of Ecology and Systematics, 23, 263-286. [DOI: 10.1146/annurev.es.23.110192.001403]

• Olsson, M., Shine, R., Madsen, T., Gullberg, A. and Tegelström, H. (1996) Sperm selection by females. Nature, 383, 585. [DOI: 10.1038/383585a0]

• Orians, G. H. (1969) On the evolution of mating systems in birds and mammals. American Naturalist, 103, 589-603. [DOI: 10.1086/282628]

• Orita, M., Iwahana, H., Kanazawa, H., Hayashi, K. and Sekiya, T. (1989) Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms. Proceedings of the National Academy of Sciences of the USA, 86, 2766-2770. [PubMed: 2565038] [DOI: 10.1073/pnas.86.8.2766]

• Ortiz-Garcia, S., Ezcurra, E., Schoel, B., Acevedo, F., Sobernon, J. and Snow, A. A. (2005) Absence of detectable transgenes in local landraces of maize in Oaxaca, Mexico (2003-2004). Proceedings of the National Academy of Sciences USA, 102, 12338-12343. [DOI: 10.1073/pnas.0503356102]

• Osborn, A. M. and Smith, C. J. (2005) Molecular Microbial Ecology. Taylor & Francis, New York.

• Otto, S. P. and Yong, P. (2002) The evolution of gene duplicates. Advances in Genetics, 46, 451-483. [PubMed: 11931235]

• Ouborg, N. J., Vergeer, P. and Mix, C. (2006) The rough edges of the conservation genetics paradigm for plants. Journal of Ecology, 94, 1233-1248. [DOI: 10.1111/j.1365-2745.2006.01167.x]

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P

• Pääbo, S. (1989) Ancient DNA: extraction, characterization, molecular cloning and enzymatic amplification. Proceedings of the National Academy of Sciences of the USA, 86, 1939-1943. [DOI: 10.1073/pnas.86.6.1939]

• Paetkau, D. and Strobeck, C. (1994) Microsatellite analysis of genetic variation in black bear populations. Molecular Ecology, 3, 489-495. [PubMed: 7952329]

• Page, R. D. M. and Holmes, E. C. (1998) Molecular Evolution: A Phylogenetic Approach. Blackwell Publishing, Oxford.

• Pagel, M. (1994) Detecting correlated evolution in phylogenies: a general method for the comparative analysis of discrete characters. Proceedings of the Royal Society of London B, 255, 37-45. [DOI: 10.1098/rspb.1994.0006]

• Palsboll, P. J., Bérubé, M. and Allendorf, F. W. (2006) Identification of management units using population genetic data. Trends in Ecology and Evolution, 22, 11-16. [DOI: 10.1016/j.tree.2006.09.003]

• Paradisi, R., Neri, S., Pession, A., Magrini, E., Bellavia, E., Ceccardi, S. et al. (2000) Human leukocyte antigen II expression in sperm cells: comparison between fertile and infertile men. Archives of Andrology, 45, 203-213. [PubMed: 11111869] [DOI: 10.1080/01485010050193986]

• Parham, J. F., Simison, W. B., Kozak, K. H., Feldman, C. R. and Shi, H. (2001) New Chinese turtles: endangered or invalid? A reassessment of two species using mitochondrial DNA, allozyme electrophoresis and known-locality specimens. Animal Conservation, 4, 357-367.

• Paulo, O. S., Jordan, W. C., Bruford, M. W. and Nichols, R. A. (2002) Using nested clade analysis to assess the history of colonization and the persistence of populations of an Iberian lizard. Molecular Ecology, 11, 809-819. [PubMed: 11972766] [DOI: 10.1046/j.1365-294X.2002.01484.x]

• Pearse, D. E. and Crandall, K. A. (2004) Beyond Fst: analysis of population genetic data for conservation. Conservation Genetics, 5, 585-602. [DOI: 10.1007/s10592-003-1863-4]

• Pearse, D. E., Arndt, A. D., Valenzuela, N., Miller, B. A., Cantarelli, V. and Sites, J. W. (2006) Estimating population structure under nonequilibrium conditions in a conservation context: continent-wide population genetics of the giant Amazon river turtle, Podocnemis expansa (Chelonia; Podocnemididae). Molecular Ecology, 15, 985-1006. [PubMed: 16599962]

• Peel, D., Ovenden, J. R. and Peel, S. L. (2004) NeEstimator: Software for estimating effective population size. Version 1.2; Queensland Government, Department of Primary Industries and Fisheries, Queensland.

• Pence, V. C. (1999) The application of biotechnology for the conservation of endangered plants. In: Plant Conservation Biotechnology (Benson, E. E.). Taylor & Francis, London, pp. 227-241.

• Penn, D. J. (2002) The scent of genetic compatibility: Sexual selection and the major histocompatibility complex. Ethology, 108, 1-21. [DOI: 10.1046/j.1439-0310.2002.00768.x]

• Penn, D. J., Damjanovich, K. and Potts, W. K. (2002) MHC heterozygosity confers a selective advantage against multiple-strain infections. Proceedings of the National Academy of Science of the USA, 99, 11260-11264. [DOI: 10.1073/pnas.162006499]

• Pierce, B. A. and Mitton, J. B. (1982) Allozyme heterozygosity and growth in the tiger salamander, Ambystoma tigrinum. Journal of Heredity, 73, 250-253. [PubMed: 7108182]

• Piertney, S. B. and Oliver, M. K. (2006) The evolutionary ecology of the major histocompatibility complex. Heredity, 96, 7-21. [PubMed: 16094301]

• Piggott, M. P. and Taylor, A. C. (2003) Remote collection of animal DNA and its applications in conservation management and understanding the population biology of rare and cryptic species. Wildlife Research, 30, 1-13. [DOI: 10.1071/WR02077]

• Pigliucci, M. (1996) How organisms respond to environmental changes: from phenotypes to molecules (and vice versa). Trends in Ecology and Evolution, 11, 4, 168-173. [DOI: 10.1016/0169-5347%2896%2910008-2]

• Pilson, D. and Prendeville, H. R. (2004) Ecological effects of transgenic crops and the escape of transgenes into wild populations. Annual Review of Ecology Evolution and Systematics, 35, 149-174. [DOI: 10.1146/annurev.ecolsys.34.011802.132406]

• Pimm, S. L., Dollar, L. and Bass, O. L. (2006) The genetic rescue of the Florida panther. Animal Conservation, 9, 115-122. [DOI: 10.1111/j.1469-1795.2005.00010.x]

• Piry, S., Luikart, G. and Cornuet, J. M. (1999) BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. Journal of Heredity, 90, 502-503. [DOI: 10.1093/jhered%2F90.4.502]

• Pla, M., La Plaz, J-L., Penas, G., Garcia, N., Palaudelmas, M., Esteve, T. et al. (2006) Assessment of real-time PCR-based methods for quantification of pollen-mediated gene flow from GM to conventional maize in a field study. Transgenic Research, 15, 219-228. [DOI: 10.1007/s11248-005-4945-x]

• Podar, M. and Reysenbach, A-L. (2006) New opportunities revealed by biotechnological explorations of extremophiles. Current Opinion in Biotechnology, 17, 250-255. [PubMed: 16701993] [DOI: 10.1016/j.copbio.2006.05.002]

• Polley, A., Seigner, E. and Ganal, M. W. (1997) Identification of sex in hop (Humulus lupulus) using molecular markers. Genome, 40, 357-361.

• Porter, A., Fiumera, A. C. and Avise, J. C. (2002) Egg mimicry and alloparental care: two mate-attracting tactics by which nesting striped darter (Etheostoma virgatum) males enhance reproductive success. Behavioral Ecology and Sociobiology, 51, 350-359. [DOI: 10.1007/s00265-002-0456-4]

• Posada, D., Crandall, K. A. and Templeton, A. R. (2000) GeoDis: a program for the cladistic nested clade analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487-488. [PubMed: 10736051] [DOI: 10.1046/j.1365-294x.2000.00887.x]

• Powers, D. A., Lauerman, T., Crawford, D. and DiMichele, L. (1991) Genetic mechanisms for adapting to a changing environment. Annual Review of Genetics, 25, 629-659. [DOI: 10.1146/annurev.ge.25.120191.003213]

• Pritchard, J. K., Stephens, M. and Donnelly, P. (2000) Inference of population structure using multilocus genotype data. Genetics, 155, 945-959. [PubMed: 10835412]

• Pusey, A. and Wolf, M. (1996) Inbreeding avoidance in animals. Trends in Ecology and Evolution, 11, 201-209. [DOI: 10.1016/0169-5347%2896%2910028-8]

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Q

• Queller, D. C. and Goodnight, K. F. (1989) Estimating relatedness using genetic markers. Evolution, 43, 258-275. [DOI: 10.2307/2409206]

• Queller, D. C., Strassmann, J. E. and Hughes, C. R. (1993) Microsatellites and kinship. Trends in Ecology and Evolution, 8, 285-288. [DOI: 10.1016/0169-5347%2893%2990256-O]

• Quicke, D. L. J. (1993) Principles and Techniques of Contemporary Taxonomy. Blackie Academic & Professional, Glasgow.

• Quinn, T. W., Quinn, J. S., Cooke, F. and White, B. N. (1987) DNA marker analysis detects multiple maternity and paternity in single broods of the lesser snow goose. Nature, 326, 392-394. [DOI: 10.1038/326392a0]

• Quist, D. and Chapela, I. H. (2001) Transgenic DNA introgressed into traditional maize landraces in Oaxaca, Mexico. Nature, 414, 541-543. [PubMed: 11734853] [DOI: 10.1038/35107068]

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R

• Rabouam, C., Comes, A. M., Bretagnolle, V., Humbert, J. F., Periquet, G. and Bigot, Y. (1999) Features of DNA fragments obtained by random amplified polymorphic DNA (RAPD) assays. Molecular Ecology, 8, 493-503. [PubMed: 10199010] [DOI: 10.1046/j.1365-294X.1999.00605.x]

• Radajewski, S., Ineson, P., Parekh, N. R. and Murrell, J. C. (2000) Stable-isotope probing as a tool in microbial ecology. Nature, 403, 646-649. [PubMed: 10688198] [DOI: 10.1038/35001054]

• Ramsay, M. M. (2003) Re-establishment of the lady's slipper orchid in the UK. Re-introduction News. Newsletter of the IUCN/SSC Re-introduction Specialist Group, Abu Dhabi, UAE, 22, 26-28.

• Ramsay, M. M. and Stewart, J. (1998) Reestablishment of the lady's slipper orchid (Cypripedium calceolus L.) in Britain. Botanical Journal of the Linnean Society, 126, 173-181. [DOI: 10.1006/bojl.1997.0152]

• Raps, A., Kehr, J., Gugerli, P., Moar, W. J., Bigler, F. and Hilbeck, A. (2001) Immunological analysis of phloem sap of Bacillus thuringiensis corn and of the nontarget herbivore Rhopalosiphium padi (Homoptera: Aphididae) for the presence of Cry1Ab. Molecular Ecology, 10, 525-533. [PubMed: 11298965] [DOI: 10.1046/j.1365-294x.2001.01236.x]

• Raspé, O., Saumitou-Laprade, P., Cuguen, J. and Jacquemart, A-L. (2000) Chloroplast DNA haplotype variation and population differentiation in Sorbus aucuparia L. (Rosaceae: Maloideae). Molecular Ecology, 9, 1113-1122. [DOI: 10.1046/j.1365-294x.2000.00977.x]

• Rassmann, K. (1997) Evolutionary age of the Gal"gos iguanas predates the age of the present Gal"gos Islands. Molecular Phylogenetics and Evolution, 7, 158-172. [PubMed: 9126557] [DOI: 10.1006/mpev.1996.0386]

• Raup, D. M. (1993) Extinction: Bad Genes or Bad Luck. Oxford University Press, Oxford.

• Ravenschlag, K., Sahm, K., Knoblauch, C., Jørgensen, B. B. and Amann, R. (2000) Community structure, cellular rRNA content and activity of sulfate-reducing bacteria in marine Arctic sediments. Applied and Environmental Microbiology, 66, 3592-3602. [DOI: 10.1128/AEM.66.8.3592-3602.2000]

• Raymond, M. and Rousset, F. (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 83, 239.

• Reed, D. H. and Frankham, R. (2001) How closely correlated are molecular and quantitative measures of genetic variation? A meta-analysis. Evolution, 55, 1095-1103. [PubMed: 11475045] [DOI: 10.1554/0014-3820%282001%29055%5B1095%3AHCCAMA%5D2.0.CO%3B2]

• Remington, C. L. (1968) Suture-zones of hybrid interaction between recently joined biotas. In: Evolutionary Biology, (Dobzhansky, T., Hecht, M. K. and Steere, W. C. eds) Vol. 2. Appleton-Century-Crofts, New York, pp. 321-428.

• Reusch, T. B. H., Häberli, M. A., Aeschlimann, P. B. and Milinski, M. (2001) Female sticklebacks count alleles in a strategy of sexual selection explaining MHC polymorphism. Nature, 414, 300-302. [DOI: 10.1038/35104547]

• Rice, W. R. (1996) Sexually antagonistic male adaptation triggered by experimental arrest of female evolution. Nature, 381, 232-234. [PubMed: 8622764] [DOI: 10.1038/381232a0]

• Richardson, D. S., Jury, F. L., Blaakmeer, K., Komedeur, J. and Burke, T. (2001) Parentage-assignment and extra-group paternity in a cooperative breeder: the Seychelles warbler (Acrocephalus sechellensis). Molecular Ecology, 10, 2263-2273. [DOI: 10.1046/j.0962-1083.2001.01355.x]

• Riesenfeld, C. S., Schloss, P. D. and Handelsman, J. (2004) Metagenomics: genomic analysis of microbial communities. Annual Review of Genetics, 38, 525-552. [PubMed: 15568985] [DOI: 10.1146/annurev.genet.38.072902.091216]

• Riesner, D., Henco, K. and Steger, G. (1991) Temperature-gradient gel electrophoresis: a method for the analysis of conformational transitions and mutations in nucleic acids and proteins. Advances in Electrophoresis, 4, 169-250.

• Ritland, K. (2000) Marker-inferred relatedness as a tool for detecting heritability in nature. Molecular Ecology, 9, 1195-1204. [PubMed: 10972759] [DOI: 10.1046/j.1365-294x.2000.00971.x]

• Roberts, R. J. and Macelis, D. (2001) REBASE-restriction enzymes and methylases. Nucleic Acids Research, 29, 268-269. [PubMed: 11125108] [DOI: 10.1093/nar%2F29.1.268]

• Roberts, S. C., Little, A. C., Gosling, L. M., Jones, B. C., Perrett, D. I., Carter, V. and Petrie, M. (2005a) MHC-assortative facial preferences in humans. Biology Letters, 1, 400-403. [PubMed: 17148217] [DOI: 10.1098/rsbl.2005.0343]

• Roberts, S. C., Little, A. C., Gosling, L. M., Perrett, D. I., Carter, V., Jones, B. C., Penton-Voak, I. and Petrie, M. (2005b) MHC-heterozygosity and human facial attractiveness. Evolution and Human Behavior, 26, 213-226. [DOI: 10.1016/j.evolhumbehav.2004.09.002]

• Roca, A. L., Georgiadis, N., Pecon-Slattery, J. and O'Brien, S. J. (2001) Genetic evidence for two species of elephant in Africa. Science, 293, 1473-1477. [DOI: 10.1126/science.1059936]

• Rochaix, J.-D. (1997) Chloroplast reverse genetics: New insights into the function of plastid genes. Trends in Plant Science, 2, 419-425. [DOI: 10.1016/S1360-1385%2897%2990025-X]

• Rondon, M. R., August, P. R., Bettermann, A. D., Brady, S. F., Grossman, T. H.; Liles, M. R. et al. (2000) Cloning the soil metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Applied and Environmental Biology, 66, 2541-2547. [DOI: 10.1128/AEM.66.6.2541-2547.2000]

• Roslin, T. (2001) Spatial population structure in a patchily distributed beetle. Molecular Ecology, 10, 823-837. [PubMed: 11348492] [DOI: 10.1046/j.1365-294X.2001.01235.x]

• Ross, K. G., Shoemaker, D. D., Kriegen, M. J. B., Detheer, C. J. and Keller, L. (1999) Assessing genetic structure with multiple classes of molecular markers: a case study involving the introduced fire ant Solenopsis invicta. Molecular Biology and Evolution, 16, 525-543.

• Rossello-Mora, R. and Amann, R. (2001) The species concepts for prokaryotes. FEMS Microbiology Reviews 25, 39-67. [PubMed: 11152940] [DOI: 10.1111/j.1574-6976.2001.tb00571.x]

• Rousset, F. and Raymond, M. (1997) Statistical analyses of population genetic data: new tools, old concepts. Trends in Ecology and Evolution, 12, 313-317. [DOI: 10.1016/S0169-5347%2897%2901104-X]

• Rowe, G. and Beebee, T. J. C. (2003) Population on the verge of a mutational meltdown? Fitness costs of genetic load for an amphibian in the wild. Evolution, 57, 177-181. [PubMed: 12643580] [DOI: 10.1554/0014-3820%282003%29057%5B0177%3APOTVOA%5D2.0.CO%3B2]

• Rowe, G. and Beebee, T. J. C. (2005) Intraspecific competition disadvantages inbred natterjack toad (Bufo calamita) genotypes over outbred ones in a shared pond environment. Journal of Animal Ecology, 74, 71-76. [DOI: 10.1111/j.1365-2656.2004.00898.x]

• Rowe, G., Beebee, T. J. C. and Burke, T. (1997) PCR primers for polymorphic microsatellite loci in the anuran amphibian Bufo calamita. Molecular Ecology, 6, 401-402. [PubMed: 9131818] [DOI: 10.1046/j.1365-294X.1997.00197.x]

• Rowe, G., Beebee, T. J. C. and Burke, T. (1999) Microsatellite heterozygosity, fitness and demography in natterjack toads Bufo calamita. Animal Conservation, 2, 85-92. [DOI: 10.1111/j.1469-1795.1999.tb00053.x]

• Rowe, G., Beebee, T. J. C. and Burke, T. (2000) A microsatellite analysis of natterjack toad, Bufo calamita, metapopulations. Oikos, 88, 641-651. [DOI: 10.1034/j.1600-0706.2000.880321.x]

• Rowe, G., Harris, J. D. and Beebee, T. J. C. (2006) Lusitania revisited: a phylogeographic analysis of the natterjack toad Bufo calamita across its entire biogeographical range. Molecular Phylogenetics and Evolution, 39, 335-346. [PubMed: 16230033] [DOI: 10.1016/j.ympev.2005.08.021]

• Ryder, O. A. (1986) Species conservation and systematics - the dilemma of subspecies. Trends in Ecology and Evolution, 1, 9-10. [DOI: 10.1016/0169-5347%2886%2990059-5]

• Ryder, O. A. (2002) Cloning advances and challenges for conservation. Trends in Biotechnology, 20, 231-232. [PubMed: 12007484] [DOI: 10.1016/S0167-7799%2802%2901954-6]

• Ryder, O. A., McLaren, A., Brenner, S., Zhang, Y.-P. and Benirschke, K. (2000) DNA banks for endangered animal species. Science, 288, 275-277. [DOI: 10.1126/science.288.5464.275]

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S

• Saccheri, I. J. and Brakefield, P. M. (2002) Rapid spread of immigrant genomes into inbred populations. Proceedings of the Royal Society of London B, 269, 1073-1078. [DOI: 10.1098/rspb.2002.1963]

• Saccheri, I. J., Kuussaari, M., Kankare, M., Vikman, P., Fortelius, W. and Hanski, I. (1998) Inbreeding and extinction in a butterfly metapopulation. Nature, 392, 491-494. [DOI: 10.1038/33136]

• Saccone, C., Gissi, C., Reyes, A., Larizza, A., Sbisa, E. and Pesole, G. (2002) Mitochondrial DNA in metazoa: degree of freedom in a frozen event. Gene, 286, 3-12. [PubMed: 11943454] [DOI: 10.1016/S0378-1119%2801%2900807-1]

• Saeglitz, C., Pohl, M. and Bartsch, D. (2000) Monitoring gene flow from transgenic sugar beet using cytoplasmic male-sterile bait plants. Molecular Ecology, 9, 2035-2040. [PubMed: 11123616] [DOI: 10.1046/j.1365-294X.2000.01109.x]

• Sagvik, J., Uller, T. and Olsson, M. (2005) Outbreeding depression in the common frog, Rana temporaria. Conservation Genetics, 6, 205-211. [DOI: 10.1007/s10592-004-7829-3]

• Saiki, R. K., Gelfand, D. H., Stoffel, S., Scharf, S. J., Higuchi, R., Horn, G. T. et al. (1988) Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science, 239, 487-491. [PubMed: 2448875] [DOI: 10.1126/science.2448875]

• Saiki, R. K., Scharf, S., Faloona, F., Mullis, K. B., Horn, G. T., Erlich, H. A. et al. (1985) Enzymatic amplification of β-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science, 230, 1350-1354. [PubMed: 2999980] [DOI: 10.1126/science.2999980]

• Sakai, M. and Kobayashi, M. (1992) Detection of Renibacterium salmoninarum, the causative agent of bacterial kidney disease in salmonid fish, from pen-cultured CoHo salmon. Applied and Environmental Microbiology, 58, 1061-1063. [PubMed: 16348666]

• Salzberg, S. L., White, O., Peterson, J. and Eisen, J. A. (2001) Microbial genes in the human genome: lateral transfer or gene loss? Science, 292, 1903-1906. [PubMed: 11358996] [DOI: 10.1126/science.1061036]

• Salzburger, W., Niederstätter, H., Brandstätter, A., Berger, B., Parson, W., Snoeks, J. and Sturmbauer, C. (2006) Colour-assortative mating among populations of Tropheus moorii, a cichlid fish from Lake Tanganyika, East Africa. Proceedings of the Royal Society of London Series B, 273, 257-266. [DOI: 10.1098/rspb.2005.3321]

• Sandermann, H. (2006) Plant biotechnology: ecological case studies on herbicide resistance. Trends in Plant Science, 11, 324-328. [PubMed: 16781885] [DOI: 10.1016/j.tplants.2006.05.004]

• Sanger, F., Nicklen, S. and Coulson, A. R. (1977) DNA sequencing with chain-terminating inhibitors. Proceedings of the National Academy of Sciences of the USA, 74, 5463-5467. [PubMed: 271968] [DOI: 10.1073/pnas.74.12.5463]

• Sauter, A., Brown, M. J. F., Baer, B. and Schmid-Hempel, P. (2000) Males of social insects can prevent queens from multiple mating. Proceedings of the Royal Society of London B, 268, 1449-1454. [DOI: 10.1098/rspb.2001.1680]

• Savolainen, V., Cowan, R. S., Vogler, A. P., Roderick, G. K. and Lane, R. (2005) Towards writing the encyclopaedia of life: an introduction to DNA barcoding. Philosophical Transactions of the Royal Society B, 360, 1805-1811. [DOI: 10.1098/rstb.2005.1730]

• Schierwater, E. B., Streit, B., Wagner, G. P. and DeSalle, R. (eds) (1994) Molecular Ecology and Evolution: Approaches and Applications. Birkhauser Verlag, Basel.

• Schlötterer, C., Amos, B. and Tautz, D. (1991) Conservation of polymorphic simple sequences in cetacean species. Nature, 354, 63-65. [DOI: 10.1038/354063a0]

• Schmalenberger, A., Schweiger, F. and Tebbe, C. C. (2001) Effects of primers hybridising to evolutionarily conserved regions of the small-subunit rRNA gene in PCR-based microbial community analyses and genetic profiling. Applied and Environmental Microbiology, 67, 3557-3563. [DOI: 10.1128/AEM.67.8.3557-3563.2001]

• Schmid-Hempel, R. and Schmid-Hempel, P. (2000) Female mating frequencies in Bombus spp. from central Europe. Insectes Sociaux, 47, 36-41. [DOI: 10.1007/s000400050006]

• Schneider, S., Kueffer, J-M., Roessli, D. and ExcoAer, L. (1997) Arlequin ver. 1.1: A Software for Population Genetic Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland<.

• Schneider, S., Roessli, D. and ExcoAer, L. (2000) Arlequin ver. 2.00: A Software for Population Genetic Data Analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland.

• Schuler, T. H., Denholm, I., Jouanin, L., Clark, S. J., Clark, A. J. and Poppy, G. M. (2001) Population-scale laboratory studies of the effect of transgenic plants on nontarget insects. Molecular Ecology, 10, 1845-1853. [PubMed: 11472551] [DOI: 10.1046/j.0962-1083.2001.01309.x]

• Schulte, P. M. (2001) Environmental adaptations as windows on molecular evolution. Comparative Biochemistry and Physiology B, 128, 597-611. [DOI: 10.1016/S1096-4959%2800%2900357-2]

• Schwartz, M. K., Luikart, G. and Waples, R. S. (2006) Genetic monitoring as a promising tool for conservation management. Trends in Ecology and Evolution, 22, 25-33. [PubMed: 16962204] [DOI: 10.1016/j.tree.2006.08.009]

• Schwartz, M. K., Tallmon, D. A. and Luikart, G. (1998) Review of DNA-based census and effective population size estimators. Animal Conservation, 1, 293-299. [DOI: 10.1111/j.1469-1795.1998.tb00040.x]

• Scott-White, P. and Densmore, L. D. (1992) Mitochondrial DNA isolation. In: Molecular Genetic Analysis of Populations: A Practical Approach (Hoelzel, A. R.). IRL at Oxford University Press, Oxford, UK, pp. 29-58.

• Sechrest, W., Brooks, T. M., da Fonseca, G. A. B., Konstant, W. R., Mittermeier, R. A., Purvis, A. et al. (2002) Hotspots for the conservation of evolutionary history. Proceedings of the National Academy of Sciences of the USA, 99, 2067-2071. [PubMed: 11854502] [DOI: 10.1073/pnas.251680798]

• Seddon, J. M., Sundqvist, A. K., Bjornerfeldt, S. and Ellegren, H. (2006) Genetic identification of immigrants to the Scandinavian wolf population. Conservation Genetics, 7, 225-230. [DOI: 10.1007/s10592-005-9001-0]

• Seehausen, O. and van Alphen, J. J. M. (1998) The effect of male coloration on female mate choice in closely related Lake Victoria cichlids (Haplochromis nyererei complex). Behavioral Ecology and Sociobiology, 42,1-8. [DOI: 10.1007/s002650050405]

• Seehausen, O., van Alphen, J. J. M. and Witte, F. (1997) Cichlid fish diversity threatened by eutrophication that curbs sexual selection. Science, 277, 1808-1811. [DOI: 10.1126/science.277.5333.1808]

• Selwood, L. (1982) Brown Antechinus Antechinus stuartii: management of breeding colonies to obtain embryonic material and pouch young. In: The Management of Australian Mammals in Captivity (Evans, D. D.). Zoological Board of Victoria, Melbourne, pp. 31-36.

• Selwood, L. and McCallum, F. (1987) Relationship between longevity of spermatozoa after insemination and the percentage of normal embryos in brown marsupial mice (Antechinus stuartii). Journal of Reproduction and Fertility, 79, 495-503.

• Sharrock, J. T. R. (1976) The Atlas of Breeding Birds in Britain and Ireland. Poyser, Berkhamsted.

• Shaw, A. J. (2000) Molecular phylogeography and cryptic speciation in the mosses, Mielichhoferia elongata and M. mielichhoferia (Bryaceae). Molecular Ecology, 9, 595-608. [PubMed: 10792702] [DOI: 10.1046/j.1365-294x.2000.00907.x]

• Shearer, T. L., van Oppen, M. J. H., Romano, S. L. and Worheide, G. (2002) Slow mitochondrial DNA sequence evolution in the Anthozoa (Cnidaria). Molecular Ecology, 11, 2475-2487. [PubMed: 12453233] [DOI: 10.1046/j.1365-294X.2002.01652.x]

• Shedlock, A. M. and Okada, N. (2000) SINE insertions: powerful tools for molecular systematics. BioEssays, 22: 148-160. [PubMed: 10655034] [DOI: 10.1002/%28SICI%291521-1878%28200002%2922%3A2%3C148%3A%3AAID-BIES6%3E3.0.CO%3B2-Z]

• Shelton, D. R. and Karns, J. S. (2001) Quantitative detection of Escherichia coli O157 in surface waters by using immunomagnetic electrochemiluminescence. Applied and Environmental Microbiology, 67, 2908-2915. [PubMed: 11425701] [DOI: 10.1128/AEM.67.7.2908-2915.2001]

• Sheppard, S. K. and Harwood, J. D. (2005) Advances in molecular ecology: tracking trophic links through predator-prey food webs. Functional Ecology, 19, 751-762. [DOI: 10.1111/j.1365-2435.2005.01041.x]

• Sheppard, S. K., Bell, J., Sunderland, K. D., Fenlon, J., Skervin, D. and Symondson, W. O. C. (2005) Detection of secondary predation by PCR analyses of the gut contents of invertebrate generalist predators. Molecular Ecology, 14, 4461-4468. [PubMed: 16313606]

• Sherwin, W. B., Timms, P., Wilcken, J. and Houlden, B. (2000) Analysis and conservation implications of koala genetics. Conservation Biology, 14, 639-649. [DOI: 10.1046/j.1523-1739.2000.99384.x]

• Shields, G. F., Adams, D., Garner, G., Labelle, M., Pietsch, J., Ramsay, M. et al. (2000) Phylogeography of mitochondrial DNA variation in brown bears and polar bears. Molecular Phylogenetics and Evolution, 15, 319-326. [PubMed: 10837161] [DOI: 10.1006/mpev.1999.0730]

• Shivji, M. S., Chapman, D. D., Pikitch, E. K. and Raymond, P. W. (2005) Genetic profiling reveals international trade in fins of the great white shark, Carcharadon Carcharias. Conservation Genetics, 6, 1035-1039. [DOI: 10.1007/s10592-005-9082-9]

• Shoemaker, J. S., Painter, I. S. and Weir, B. S. (1999) Bayesian statistics in genetics. Trends in Genetics, 15, 354-358. [PubMed: 10461203] [DOI: 10.1016/S0168-9525%2899%2901751-5]

• Shorey, L., Piertney, S., Stone, J. and Höglund, J. (2000) Fine-scale genetic structuring on Manacus manacus leks. Nature, 408, 352-353. [DOI: 10.1038/35042562]

• Short, R. V. (1976) The origin of species. In: Reproduction in Mammals: Book 6, The Evolution of Reproduction (Austin, C. R. and Short, R. V. eds). Cambridge University Press, Cambridge, pp. 110-148.

• Sigurdson, S., Hedman, M., Sistonen, P., Sajantila, A. and Syvanen, A. C. (2006) A microarray system for genotyping 150 single nucleotide polymorphisms in the coding region of human mitochondrial DNA. Genomics, 87, 434-442. [DOI: 10.1016/j.ygeno.2005.11.022]

• Silva, F. J., Latorre, A. and Moya, A. (2001) Genome size reduction through multiple events of gene disintegration in Buchnera APS. Trends in Genetics 17, 615-618. [PubMed: 11672844] [DOI: 10.1016/S0168-9525%2801%2902483-0]

• Simpson, G. G. (1944) Tempo and Mode in Evolution. Columbia University Press, New York.

• Slate, J., David, P., Dodds, K. G., Veenvliet, B. A., Broad, T. E. and McEwan, J. C. (2004) Understanding the relationship between the inbreeding coeAcient and multilocus heterozygosity: theoretical expectations and empirical data. Heredity, 93, 255-265. [DOI: 10.1038/sj.hdy.6800485]

• Slate, J., Marshall, T. and Pemberton, J. (2000) A retrospective assessment of the accuracy of the paternity inference program CERVUS. Molecular Ecology, 9, 801-808. [PubMed: 10849296] [DOI: 10.1046/j.1365-294x.2000.00930.x]

• Slatkin, M. (1993) Isolation by distance in equilibrium and non-equilibrium populations. Evolution, 47, 264-279. [DOI: 10.2307/2410134]

• Slatkin, M. (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457-462. [PubMed: 7705646]

• Sloane, M. A., Sunnucks, P., Alpers, D., Beheregaray, L. B. and Taylor, A. C. (2000) Highly reliable genetic identification of individual northern hairy-nosed wombats from single remotely collected hairs: a feasible censusing method. Molecular Ecology, 9, 1233-1240. [PubMed: 10972763] [DOI: 10.1046/j.1365-294x.2000.00993.x]

• Slowinski, J. B. and Arbogast, B. S. (1999) Is there an inverse relationship between body size and the rate of molecular evolution? Systematic Biology, 48, 396-399. [PubMed: 12066715] [DOI: 10.1080/106351599260364]

• Smets, B. F. and Barkay, T. (2005) Horizontal gene transfer: perspectives at a crossroads of scientific disciplines. Nature Reviews Microbiology, 3, 675-678. [PubMed: 16145755] [DOI: 10.1038/nrmicro1253]

• Smith, E. F. G., Arctander, P., Fjeldsa, J. and Amir, O. G. (1991) A new species of shrike (Laniidae, Lianiarius) from Somalia, verified by DNA-sequence data from the only known individual. Ibis, 133, 227-235.

• Smith, M. W., Feng, D.-F. and Doolittle, R. F. (1992) Evolution by acquisition: the case for horizontal gene transfers. Trends in Biochemical Sciences, 17, 489-493. [PubMed: 1471257] [DOI: 10.1016/0968-0004%2892%2990335-7]

• Smithies, O. (1955a) Grouped variations in the occurrence of new protein components in normal human serum. Nature, 175, 307-308. [PubMed: 13235885] [DOI: 10.1038/175307a0]

• Smithies, O. (1955b) Zone electrophoresis in starch gels: group variations in the serum proteins of normal human adults. Biochemical Journal, 61, 629-641. [PubMed: 13276348]

• Sneddon, L. U., Margareto, J. and Cossins, A. R. (2005) The use of transcriptomics to address questions in behaviour: Production of a suppression subtractive hybridisation library from dominance hierarchies of rainbow-trout. Physiological and Biochemical Zoology, 78, 695-705. [PubMed: 16052453] [DOI: 10.1086/432141]

• Snell, C., Tetteh, J. and Evans, I. H. (2005) Phylogeography of the pool frog (Rana lessonae Camerano) in Europe: evidence for native status in Great Britain and for an unusual postglacial colonization route. Biological Journal of the Linnean Society, 85, 41-51. [DOI: 10.1111/j.1095-8312.2005.00471.x]

• Snow, A. A., Andow, D. A., Gepts, P., Hallerman, E. M., Power, A., Tiedje, J. M. et al. (2005) Genetically engineered organisms and the environment: current status and recommendations. Ecological Applications, 15, 377-404. [DOI: 10.1890/04-0539]

• Snustad, D. P. and Simmons, M. J. (2005) Principles of Genetics, 4th edn. John Wiley& Sons, NewYork.

• Soleri, D., Cleveland, D. A. and Cuevas, F. A. (2006) Transgenic crops and crop varietal diversity: the case of maize in Mexico. Bioscience, 6, 503-513.

• Soltis, D. E., Morris, A. B., McLachlan, J. S., Manos, P. S. and Soltis, P. S. (2006) Comparative phylogeography of unglaciated eastern North America. Molecular Ecology, 15, 4261-4293. [DOI: 10.1111/j.1365-294X.2006.03061.x]

• Soltis, P. S. and Gitzendanner, M. A. (1999) Molecular systematics and the conservation of rare species. Conservation Biology, 13, 471-483. [DOI: 10.1046/j.1523-1739.1999.97286.x]

• Sota, T., Ishikawa, R., Ujiie, M., Kusumoto, F. and Vogler, A. P. (2001) Extensive trans-species mitochondrial polymorphisms in the carabid beetles Carabus subgenus Ohomopterus caused by repeated introgressive hybridization. Molecular Ecology, 10, 2833-2847. [PubMed: 11903896] [DOI: 10.1046/j.1365-294X.2001.t01-1-01404.x]

• Spielman, D., Brook, B. W. and Frankham, R. (2004) Most species are not driven to extinction before genetic factors impact them. Proceedings of the National Academy of Sciences of the USA, 101, 15261-15264. [PubMed: 15477597] [DOI: 10.1073/pnas.0403809101]

• Spielman, D., Brook, B. W., Briscoe, D. A. and Frankham, R. (2005) Does inbreeding and loss of genetic diversity decrease disease resistance? Conservation Genetics, 5, 439-448. [DOI: 10.1023/B%3ACOGE.0000041030.76598.cd]

• Stanback, M., Richardson, D. S., Boix-Hinzen, C. and Mendelsohn, J. (2002) Genetic monogamy in Monteiro's hornbill, Tockus monteiri. Animal Behaviour, 63, 787-793. [DOI: 10.1006/anbe.2001.1975]

• Stanier, R. Y., Ingraham, J. L., Wheelis, M. L. and Painter, P. R. (1987) General Microbiology, 5th edn. Macmillan, Basingstoke, UK.

• Stearns, S. C. and Hoekstra, R. F. (2005) Evolution. An Introduction, 2nd edn. Oxford University Press, Oxford.

• Stender, H., Kurtzman, C., Hyldig-Nielsen, J. J., Sørensen, D., Broomer, A., Oliveira, K. et al. (2001) Identification of Dekkera bruxellensis (Brettanomyces) from wine by fluorescence in situ hybridization using peptide nucleic acid probes. Applied and Environmental Microbiology, 67, 938-941. [DOI: 10.1128/AEM.67.2.938-941.2001]

• Stewart, C. N., All, J. N., Raymer, P. L. and Ramachandran, S. (1997) Increased fitness of transgenic insecticidal rapeseed under insect selection pressure. Molecular Ecology, 6, 773-779. [DOI: 10.1046/j.1365-294X.1997.00239.x]

• Stewart, J. R. and Lister, A. M. (2001) Cryptic northern refugia and the origins of the modern biota. Trends in Ecology and Evolution, 16, 608-613. [DOI: 10.1016/S0169-5347%2801%2902338-2]

• Stone, R. (1999) Siberian mammoth find raises hopes, questions. Science, 286, 876-877. [PubMed: 10577229] [DOI: 10.1126/science.286.5441.876]

• Storfer, A. (1996) Quantitative genetics: a promising approach for the assessment of genetic variation in endangered species. Trends in Ecology and Evolution, 11, 343-348. [DOI: 10.1016/0169-5347%2896%2920051-5]

• Storfer, A. (1999) Gene flow and endangered species translocations: a topic revisited. Biological Conservation, 87, 173-180. [DOI: 10.1016/S0006-3207%2898%2900066-4]

• Storz, J. F. (2005) Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology, 14, 671-688. [PubMed: 15723660] [DOI: 10.1111/j.1365-294X.2005.02437.x]

• Stow, A. J., Sunnucks, P., Briscoe, D. A. and Gardner, M. G. (2001) The impact of habitat fragmentation on dispersal of Cunningham's skink (Egernia cunninghami): evidence from allelic and genotypic analyses of microsatellites. Molecular Ecology, 10, 867-878. [PubMed: 11348496] [DOI: 10.1046/j.1365-294X.2001.01253.x]

• Strand, A. E., Milligan, B. G. and Pruitt, C. M. (1996) Are populations islands? Analysis of chloroplast DNA variation in Aquilegia. Evolution, 50, 1822-1829. [DOI: 10.2307/2410739]

• Stuart, B. L. and Parham, J. F. (2007) Recent hybrid origin of three rare Chinese turtles. Conservation Genetics, 8, 169-175. [DOI: 10.1007/s10592-006-9159-0]

• Stuart, S. N., Chanson, J. S., Cox, N. A., Young, B. E., Rodrigues, A. S. L., Fischmann, D. L. and Waller, R. W. (2004) Status and trends of amphibian declines and extinctions worldwide. Science, 306, 1783-1786. [DOI: 10.1126/science.1103538]

• Sturtevant, A. H. and Dobzhansky, T. (1936) Inversions in the third chromosome of wild races of Drosophila pseudoobscura and their use in the study of the history of the species. Proceedings of the National Academy of Sciences of the USA, 22, 448-450. [PubMed: 16577723] [DOI: 10.1073/pnas.22.7.448]

• Sunnucks, P. (2000) EAcient genetic markers for population biology. Trends in Ecology and Evolution, 15, 199-203. [PubMed: 10782134] [DOI: 10.1016/S0169-5347%2800%2901825-5]

• Sunnucks, P., Wilson, A. C. C., Beheregaray, L. B., Zenger, K., French, J. and Taylor, A. C. (2000) SSCP is not so diAcult: the application and utility of single-stranded conformation polymorphism in evolutionary biology and molecular ecology. Molecular Ecology, 9, 1699-1710. [PubMed: 11091307] [DOI: 10.1046/j.1365-294x.2000.01084.x]

• Suzuki, H., Sato, Y. and Ohba, N. (2002) Gene diversity and geographic differentiation in mitochondrial DNA of the Genji firefly, Luciola Cruciata (Coleoptera: Lampyridae). Molecular Phylogenetics and Evolution, 22, 193-205. [PubMed: 11820841] [DOI: 10.1006/mpev.2001.1046]

• Swofford, D. L. (1996) PAUP*: Phylogenetic Analysis Using Parsimony (and other methods), Version 4 4. Sinauer, Sunderland, Massachusetts.

• Symula, R., Schulte, R. and Summers, K. (2003) Molecular systematics and phylogeography of the Amazonian poison frogs of the genus Dendrobates. Molecular Phylogenetics and Evolution, 26, 452-475. [PubMed: 12644404] [DOI: 10.1016/S1055-7903%2802%2900367-6]

• Szymora, J. M. and Barton, N. H. (1986) Genetic analysis of a hybrid zone between fire-bellied toads, Bombina bombina and Bombina variegata, near Cracow in Southern Poland. Evolution, 40, 1141-1159. [DOI: 10.2307/2408943]

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