« Home

Home / Biosciences » Biotechnology » Biosciences » Plant Science » Slater, Scott & Fowler: Plant Biotechnology 2e » Student resources » Hyperlinked bibliography » Chapter 13

Slater, Scott & Fowler: Plant Biotechnology 2e

Chapter 13

Developments in genetic transformation

Daniell, H. and Dhingra, A. (2002) Multigene engineering: dawn of an exciting new era in biotechnology. Current Opinion in Biotechnology 13, 136-141. [PubMed: 11950565] [DOI: 10.1016/S0958-1669(02)00297-5]

Daniell, H., Wiebe, P. O. and Millan, A. F. (2001) Antibiotic-free chloroplast engineering-an environmentally friendly approach. Trends in Plant Science 6, 237-239. [PubMed: 11378446] [DOI: 10.1016/S1360-1385(01)01949-5]

Halpin, C. (2005) Gene stacking in transgenic plants-the challenge for 21st century plant biotechnology. Plant Biotechnology Journal 3, 141-155. [PubMed: 17173615] [DOI: 10.1111/j.1467-7652.2004.00113.x]

Moffat, A. S. (2000) Can genetically modified crops go greener? Science 290, 253-254. [PubMed: 11183370] [DOI: 10.1126/science.290.5490.253]

Transcriptomics

Meyers, B. C., Tej, S. S., Vu, T. H., Haudenschild, C. D., Agrawal, V., Edberg, S. B., Ghazal, H., and Decola, S. (2004) The use of MPSS for whole-genome transcriptional analysis in Arabidopsis. Genome Research 14, 1641-1653. [PubMed: 15289482] [DOI: 10.1101/gr.2275604]

Rensink, W. A. and Buell, C. R. (2005) Microarray expression profiling resources for plant genomics. Trends in Plant Science 10, 603-609. [PubMed: 16275051] [DOI: 10.1016/j.tplants.2005.10.003]

Seki, M., Narusaka, M., Abe, H., Kasuga, M., Yamagucki-Shinzaki, K., Carninci, P., Hayashizaki, Y., and Shinozaki, K. (2001) Monitoring the expression pattern of 1300 Arabidopsis genes under drought and cold stresses by using a full-length cDNA microarray. Plant Cell 13, 61-72. [DOI: 10.1105/tpc.13.1.61]

Shoemaker, D. D. and Linsley, P. S. (2002) Recent developments in DNA microarrays. Current Opinion in Microbiology 5, 334-337. [PubMed: 12057691] [DOI: 10.1016/S1369-5274(02)00327-2]

Venkatasubbarao, S. (2004) Microarrays-status and prospects. Trends in Biotechnology 22, 630-637. [PubMed: 15542153] [DOI: 10.1016/j.tibtech.2004.10.008]

Proteomics

Aebersold, R. and Mann, M. (2003) Mass spectrometry-based proteomics. Nature 422, 198-207. [PubMed: 12634793] [DOI: 10.1038/nature01511]

Link, A. J. (2002) Multidimensional peptide separations in proteomics. Trends in Biotechnology 20, S8-S13. [PubMed: 12570153] [DOI: 10.1016/S1471-1931(02)00202-1]

Phizicky, E. M., Bastiens, P. I. H., Zhu, H., Snyder, M., and Fields, S. (2003) Protein analysis on a proteomic scale. Nature 422, 208-215. [DOI: 10.1038/nature01512]

Rabilloud, T. (2002) Two-dimensional gel electrophoresis in proteomics: old, old fashioned, but it still climbs up the mountains. Proteomics 2, 3-10. [PubMed: 11788986] [DOI: 10.1002/1615-9861(200201)2:1<3::AID-PROT3>3.0.CO;2-R]

Zhu, H. and Snyder, M. (2003) Protein chip technology. Current Opinion in Chemical Biology 7, 55-63. [PubMed: 12547427] [DOI: 10.1016/S1367-5931(02)00005-4]

Interactomics

Drewes, G. and Bouwmeester, T. (2003) Global approaches to protein-protein interactions. Current Opinion in Cell Biology 15, 199-205. [PubMed: 12648676] [DOI: 10.1016/S0955-0674(03)00005-X]

Figeys, D. (2003) Novel approaches to map protein-protein interactions. Current Opinion in Biotechnology 14, 119-125. [PubMed: 12566011] [DOI: 10.1016/S0958-1669(02)00005-8]

Metabolomics

Dunn, W. B., Bailey, N. J., and Johnson, H. F. (2005) Measuring the metabolome: current analytical technologies. The/Analyst 130, 606-625.

Sumner, L. W., Mendes, P., and Dixon, R. A. (2003) Plant metabolomics: large-scale phytochemistry in the functional genomics era. Phytochemistry 62, 817-836. [PubMed: 12590110] [DOI: 10.1016/S0031-9422(02)00708-2]

Systems biology

Blanchard, J. L. (2004) Bioinformatics and Systems Biology, rapidly evolving tools for interpreting plant response to global change. Field Crops Research 90, 117-131. [DOI: 10.1016/j.fcr.2004.07.015]

Genomics and biotechnology

Gutterson, N. and Zhang, J. Z. (2004) Genomics applications to biotech traits: a revolution in progress? Current Opinion in Plant Biology 7, 226-230. [PubMed: 15003225] [DOI: 10.1016/j.pbi.2003.12.002]

Morgante, M. and Salamini, F. (2003) From plant genomics to breeding practice. Current Opinion in Biotechnology 14, 214-219. [PubMed: 12732323] [DOI: 10.1016/S0958-1669(03)00028-4]

Paterson, A. H., Freeling, M., and Sasaki, T. (2007) Grains of knowledge: genomics of model cereals. Genome Research 15, 1643-1650. [DOI: 10.1101/gr.3725905]

Tuberosa, R. and Salvi, S. (2006) Genomics-based approaches to improve drought tolerance of crops. Trends in Plant Science 11, 405-412. [PubMed: 16843036] [DOI: 10.1016/j.tplants.2006.06.003]

Varshney, R. K., Hoisington, D. A., and Tyagi, A. K. (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology 24, 490-499. [PubMed: 16956681]

Molecular breeding

Dayteg, C., Tuvesson, S., Merker, A., Jahoor, A., and Kolodinska-Brantestam, A. (2007) Automation of DNA marker analysis for molecular breeding in crops: practical experience of a plant breeding company. Plant Breeding 126, 410-415. [DOI: 10.1111/j.1439-0523.2007.01306.x]

Meudt, H. M. and Clarke, A. C. (2006) Almost forgotten or latest practice? AFLP applications, analyses and advances. Trends in Plant Science 12, 106-117. [DOI: 10.1016/j.tplants.2007.02.001]

Morandini, P. and Salamini, F. (2003) Plant biotechnology and breeding: allied for years to come. Trends in Plant Science 8, 70-75. [PubMed: 12597873] [DOI: 10.1016/S1360-1385(02)00027-4]

Salvi, S. and Tuberosa, R. (2005) To clone or not to clone plant QTLs: present and future challenges. Trends in Plant Science 10, 297-304. [PubMed: 15949764] [DOI: 10.1016/j.tplants.2005.04.008]

Varshney, R. K., Hoisington, D. A., and Tyagi, A. K. (2006) Advances in cereal genomics and applications in crop breeding. Trends in Biotechnology 24, 490-499. [PubMed: 16956681]

TILLING

Comai, S. and Henikoff, S. (2006) TILLING: practical single-nucleotide mutation discovery. Plant Journal 45, 684-694. [PubMed: 16441355] [DOI: 10.1111/j.1365-313X.2006.02670.x]

Comai, L., Young, K., Till, B. J., Reynolds, S. H., Greene, E. A., Codomo, C. A., Enns, L. C., Johnson, J. E., Burtner, C., Odden, A. R., and Henikoff, S. (2004) Efficient discovery of DNA polymorphisms in natural populations by Ecotilling. Plant Journal 37, 778-786. [PubMed: 14871304] [DOI: 10.1111/j.0960-7412.2003.01999.x]

Gilchrist, E. J. and Haughn, G. W. (2005) TILLING without a plough: a new method with applications for reverse genetics. Current Opinion in Plant Biology 8, 211-215. [PubMed: 15753003] [DOI: 10.1016/j.pbi.2005.01.004]

Henikoff, S., Till, B. J., and Comai, L. (2004) TILLING. Traditional mutagenesis meets functional genomics. Plant Physiology 135, 630-636. [PubMed: 15155876] [DOI: 10.1104/pp.104.041061]

Innovative agronomic GM traits

He, Z. H., Zhu, Q., Dabi, T., Li, D. B., Weigel, D., and Lamb, C. (2000) Transformation of rice with the Arabidopsis floral regulator LEAFY causes early heading. Transgenic Research 9, 223-227. [PubMed: 11032371] [DOI: 10.1023/A:1008992719010]

Niki, T., Nishijima, T., Nakyama, M., Hisamatsu, T., Oyama-Okubo, N., Yamazaki, H., Hedden, P., Lange, T., Mander, L. N., and Koshioka, M. (2001) Production of dwarf lettuce by overexpressing a pumpkin gibberellin 20-oxidase gene. Plant Physiology 126, 965-972. [DOI: 10.1104/pp.126.3.965]

Pena, L., Martin-Trillo, M., Juarez, J., Pina, J. A., Navarro, L., and Martinez-Zapater, J. M. (2001) Constitutive expression of Arabidopsis LEAFY or APETALA1 genes in citrus reduces their generation time. Nature Biotechnology 19, 263-267. [PubMed: 11231561] [DOI: 10.1038/85719]

'Green' GM traits

French, C. E., Rosser, S. J., Davies, G. J., Nicklin, S., and Bruce, N. C. (1999) Biodegradation of explosives by transgenic plants expressing pentaerythritol tetranitrate reductase. Nature Biotechnology 17, 491-494. [PubMed: 10331811] [DOI: 10.1038/8673]

Hannink, N., Rosser, S. J., French, C. E., Basran, A., Murray, J. A. H., Nicklin, S., and Bruce, N. C. (2001) Phytodetoxification of TNT by transgenic plants expressing a bacterial nitroreductase. Nature Biotechnology 19, 1168-1172. [PubMed: 11731787] [DOI: 10.1038/nbt1201-1168]

Kovalchuk, O., Titov, V., Hohn, B., and Kovalchuk, I. (2001) A sensitive transgenic plant system to detect toxic inorganic compounds in the environment. Nature Biotechnology 19, 568-572. [PubMed: 11385463] [DOI: 10.1038/89327]

Pilate, G., Guiney, E., Holt, K., Petit-Conil, M., Lapierre, C., Leple, J.-C., Pollet, B., Mila, I., Webster, E. A., Marstorp, H. G., Hopkins, D. W., Jouanin, L., Boerjan, W., Schuch, W., Cornu, D., and Halpin, C. (2002) Field and pulping performances of transgenic trees with altered lignification. Nature Biotechnology 20, 607-612. [PubMed: 12042866] [DOI: 10.1038/nbt0602-607]