Slater, Scott & Fowler: Plant Biotechnology 2e 
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Chapter 04
Vector construction
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Early, K., Haag, J. R., Pontes, O., Opper, K., Juehne, T., Song, K., and Pikaard, C. S. (2006) Gateway-compatible vectors for plant functional genomics and proteomics. The Plant Journal 45, 616-629. [DOI: 10.1111/j.1365-313X.2005.02617.x]
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Karimi, M., Inze, D., and Depicker, A. (2002) GATEWAY vectors for Agrobacterium-mediated plant transformation. Trends in Plant Science 7, 193-195. [PubMed: 11992820] [DOI: 10.1016/S1360-1385(02)02251-3]
Karimi, M., De Meyer, B., and Hilson, P. (2005) Modular cloning in plant cells. Trends in Plant Science 10, 103-105. [PubMed: 15749466]
Selectable markers
Erikson, O., Hertzberg, M., and Nasholm, T. (2005) The dsdA gene from Escherichia coli provides a novel selectable marker for plant transformation. Plant Molecular Biology 57, 425-433. [PubMed: 15830131] [DOI: 10.1007/s11103-004-7902-9]
Haldrup, A., Noerremark, M., and Okkels, F. T. (2001) Plant selection principle based on xylose isomerase. In vitro Cellular and Developmental BiologyPlant 37, 114-119.
Haselhoff, J., Siemering, K. R., Prasher, D. C., and Hodge, S. (1997) Removal of a cryptic intron and subcellular localisation of green fluorescent protein are required to mark transgenic Arabidopsis plants brightly. Proceedings of the National Academy of Sciences USA 94, 2122-2127. [DOI: 10.1073/pnas.94.6.2122]
Joersbo, M. (2001) Advances in the selection of transgenic plants using non-antibiotic marker genes. Physiologia Plantarum 111, 269-271. [PubMed: 11240908] [DOI: 10.1034/j.1399-3054.2001.1110301.x]
Kaeppler, H. F., Carlson, A. R., and Menon, G. K. (2001) Routine utilization of green fluorescent protein as a visual selectable marker for cereal transformation. In vitro Cellular and Developmental BiologyPlant 37, 120-126.
LaFayette, R. R., Kane, P. M., Phan, B. H., and Parrott, W. A. (2005) Arabitol dehydrogenase as a selectable marker for rice. Plant Cell Reports 24, 596-602. [PubMed: 16151815] [DOI: 10.1007/s00299-005-0015-3]
Leyman, B., Avonce, N., Ramon, M., Van Dijck, P., Iturriaga, G., and Thevelein, J. M. (2006) Trehalose-6-phosphate synthase as an intrinsic selection marker for plant transformation. Journal of Biotechnology 121, 309-317. [PubMed: 16271790] [DOI: 10.1016/j.jbiotec.2005.08.033]
Luo, K., Zheng, X., Chen, Y., Xiao, Y., Zhoa, D., McAvoy, R., Pei, Y., and Li, Y. (2006) The maize knotted1 gene is an effective positive selectable marker gene for Agrobacterium-mediated tobacco transformation. Plant Cell Reports 25, 403-409. [DOI: 10.1007/s00299-005-0051-z]
Penna, S., Sagi, L., and Swennen, R. (2002) Positive selectable marker genes for routine plant transformation. In vitro Cellular and Developmental BiologyPlant 38, 125-128.
Reed, J., Privalle, L., Powell, M. L., Meghji, M., Dawson, J., Dunder, E., Suttie, J., Wenck, A., Launis, K., Kramer, C., Chang, Y.-F., Hansen, G., and Wright, M. (2001) Phosphomannose isomerase: an efficient selectable marker for plant transformation. In vitro Cellular and Developmental BiologyPlant 37, 127-132. [DOI: 10.1290/1071-2690(2001)037<0127:PPAGCO>2.0.CO;2]
Inducible gene expression
Gurr, S. J. and Rushton, P. J. (2005) Engineering plants with increased disease resistance: how are we going to express it? Trends in Biotechnology 23, 283-290. [PubMed: 15922080] [DOI: 10.1016/j.tibtech.2005.04.009]
Kong, H.-G., Fang, Y., and Singh, K. B. (1999) A glucocorticoid-inducible transcription system causes severe growth defects in Arabidopsis and induces defence-related genes. Plant Journal 20, 127-133. [DOI: 10.1046/j.1365-313X.1999.00575.x]
Malnoy, M., Reynoird, J., Borejsza-Wysocka, E., and Aldwinckle, H. (2006) Activation of the pathogen-inducible Gst1 promoter of potato after elicitation by Venturia inaequalis and Erwinia amylovora in transgenic apple (Malus x domestica). Transgenic Research 15, 83-93. [PubMed: 16475012] [DOI: 10.1007/s11248-005-2943-7]
Martinez, A., Sparks, C., Hart, C. A., Thompson, J., and Jepson, I. (1999) Ecdysone agonist inducible transcription in transgenic tobacco plants. Plant Journal 19, 97-106. [PubMed: 10417731] [DOI: 10.1046/j.1365-313X.1999.00504.x]
Moore, I., Samalova, M., and Kurup, S. (2006) Transactivated and chemically inducible gene expression in plants. The Plant Journal 45, 651-683. [PubMed: 16441354] [DOI: 10.1111/j.1365-313X.2006.02660.x]
Padidam, M. (2003) Chemically regulated gene expression in plants. Current Opinion in Plant Biology 6, 169-177. [PubMed: 12667875] [DOI: 10.1016/S1369-5266(03)00005-0]
Rushton, P. J., Reinst"er, A., Lipka, V., Lippok, B., and Somssich, I. E. (2002) Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling. The Plant Cell 14, 749-762. [DOI: 10.1105/tpc.010412]
Vreugdenhill, D., Claassens, M. M. J., Verhees, J., van der Krol, A. R, and van der Plas, L. H. W. (2005) Ethanol-inducible gene expression: non-transformed plants also respond to ethanol. Trends in Plant Science 11, 9-11. [DOI: 10.1016/j.tplants.2005.11.008]
Zuo, J. and Chua, N.-H. (2000) Chemical-inducible systems for regulated expression of plant genes. Current Opinion in Biotechnology 11, 146-151. [PubMed: 10753773] [DOI: 10.1016/S0958-1669(00)00073-2]
Transgene integration and expression
Butaye, K. M. J., Goderis, I. J. W. M., Wouters, P. F. J., Pues, J.-T. G., Delaure, S. L., Broekaert, W. F., Depicker, A., Cammue, B. P. A., and De Bolle, M. F. C. (2004) Stable high-level transgene expression in Arabidopsis thaliana using gene silencing mutants and matrix attachment regions. The Plant Journal 39, 440-449. [PubMed: 15255872] [DOI: 10.1111/j.1365-313X.2004.02144.x]
Fang, R.-X., Nagy, F., Sivasubramaniam, S., and Chua, N.-H. (1989) Multiple cis regulatory elements for maximal expression of the cauliflower mosaic virus 35S promoter in transgenic plants. Plant Cell 1, 141-150. [PubMed: 2535461] [DOI: 10.1105/tpc.1.1.141]
Gallie, D. R. (1998) Controlling gene expression in transgenics. Current Opinion in Plant Biology 1, 166-172. [PubMed: 10066570] [DOI: 10.1016/S1369-5266(98)80020-4]
Kumar, S. and Fladung, M. (2001) Controlling transgene integration in plants. Trends in Plant Science 6, 155-159. [PubMed: 11286920] [DOI: 10.1016/S1360-1385(01)01890-8]
Miki, B. (2002) Transgene expression and control. In vitro Cellular and Developmental BiologyPlant 38, 139-145.
Perlak, F. J., Fuchs, R. L., Dean, D. A., McPherson, S. L., and Fischoff, D. A. (1991) Modification of the coding sequence enhances plant expression of insect control protein genes. Proceedings of the National Academy of Sciences USA 88, 3324-3328. [DOI: 10.1073/pnas.88.8.3324]
RNAi
Byzova, M., Verduyn, C., De Brouwer, D., and De Block, M. (2004) Transforming petals in sepaloid organs in Arabidopsis and oilseed rape: implementation of the hairpin RNA-mediated gene silencing technology in an organ-specific manner. Planta 218, 379-387. [PubMed: 14534787] [DOI: 10.1007/s00425-003-1117-1]
Chuang, C.-F. and Meyerowitz, E. M. (2000) Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana. Proceedings of the National Academy of Sciences USA 97, 4985-4990. [DOI: 10.1073/pnas.060034297]
Dugas, D. V. and Bartel, B. (2004) MicroRNA regulation of gene expression in plants. Current Opinion in Plant Biology 7, 512-520. [PubMed: 15337093] [DOI: 10.1016/j.pbi.2004.07.011]
Guo, H.-S., Fei, J.-F., Xie, Q., and Chua, N.-H. (2003) A chemical-regulated inducible RNAi system in plants. The Plant Journal 34, 383-392. [PubMed: 12713544] [DOI: 10.1046/j.1365-313X.2003.01723.x]
Kusaba, M. (2004) RNA interference in crop plants. Current Opinion in Plant Biotechnology 15, 139-143. [DOI: 10.1016/j.copbio.2004.02.004]
Miki, D., Itoh, R., and Shimamoto, K. (2005) RNA silencing of single and multiple members in a gene family of rice. Plant Physiology 138, 1903-1913. [PubMed: 16172097] [DOI: 10.1104/pp.105.063933]
Clean-gene technology
Ebinuma, H. and Komamoine, A. (2001) MAT (multi-auto-transformation) vector system. The oncogenes of Agrobacterium as positive markers for regeneration and selection of marker free transgenic plants. In vitro Cellular and Developmental BiologyPlant 37, 103-113.
Jia, H., Pang, Y., Chen, X., and Fang, R. (2006) Removal of the selectable marker gene from transgenic tobacco plants by expression of Cre recombinase from a tobacco mosaic virus vector through agroinfection. Transgenic Research 15, 375-384. [PubMed: 16779652] [DOI: 10.1007/s11248-006-0011-6]
McCormac, A. C., Elliott, M. C., and Chen, D. F. (1999) pBECKS2000: a novel plasmid series for the facile creation of complex binary vectors which incorporates 'clean-gene' facilities. Molecular and General Genetics 261, 226-235. [PubMed: 10102356] [DOI: 10.1007/s004380050961]
McCormac, A. C., Fowler, M. R., Chen, D. F., and Elliott, M. C. (2001) Efficient co-transformation of Nicotiana tabacum by two independent T-DNAs, the effect of TDNA size and implications for genetic separation. Transgenic Research 10, 143-155. [PubMed: 11305361] [DOI: 10.1023/A:1008909203852]
Puchta, H. (2000) Removing selectable marker genes: taking the short cut. Trends in Plant Science 5, 273-274. [PubMed: 10871898] [DOI: 10.1016/S1360-1385(00)01684-8]
Wang, Y., Chen, B., Hu, Y., Li, J., and Lin, Z. (2005) Inducible excision of selectable marker gene from transgenic plants by the Cre/lox site-specific recombination system. Transgenic Research 14, 605-614. [PubMed: 16245151] [DOI: 10.1007/s11248-005-0884-9]
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