Slater, Scott & Fowler: Plant Biotechnology 2e
Chapter 01
Gene structure and expression
Alberts, B., Bray, D., Lewis, J., Raff, M., Roberts, K., and Watson, J. D. (1989) Molecular Biology of the Cell. In: Garland, New York.
Bailey-Serres, J. (1999) Selective translation of cytoplasmic mRNAs in plants. Trends in Plant Science 4, 142-148. [PubMed: 10322548] [DOI: 10.1016/S1360-1385(99)01386-2]
Bailey-Serres, J., Rochaix, J.-D., Wassenegger, M., and Filipowicz, W. (1999) Plants, their organelles, viruses and transgenes reveal the mechanisms and relevance of post-transcriptional processes. EMBO Journal 18, 5153-5158. [PubMed: 10610321] [DOI: 10.1093/emboj/18.19.5153]
Berk, A. J. (1999) Activation of RNA polymerase II transcription. Current Opinion in Cell Biology 11, 330-335. [PubMed: 10395559] [DOI: 10.1016/S0955-0674(99)80045-3]
Buchanan, B. B., Gruissem, W., and Jones, R. L. (2000) Biochemistry and Molecular Biology of Plants. American Society of Plant Physiologists: Rockville, Md.
Buratowski, S. (2000) Snapshots of RNA polymerase II transcription initiation. Current Opinion in Cell Biology 12, 320-325. [PubMed: 10801469] [DOI: 10.1016/S0955-0674(00)00095-8]
Eckardt, N. A. (2002) Alternative splicing and the control of flowering time. Plant Cell 14, 743-747. [PubMed: 11971131] [DOI: 10.1105/tpc.000000]
Gutierrez, R. A., MacIntosh, G. C., and Green, P. J. (1999) Current perspectives on mRNA stability in plants: multiple levels and mechanisms of control. Trends in Plant Science 4, 429-438. [PubMed: 10529824] [DOI: 10.1016/S1360-1385(99)01484-3]
Kornberg, R. D. (1999) Eukaryotic transcriptional control. Trends in Cell Biology 9, M46-M49. [PubMed: 10611681] [DOI: 10.1016/S0962-8924(99)01679-7]
Li, G., Hall, T. C., and Holme-Davis, R. (2002) Plant chromatin: development and gene control. BioEssays 24, 234-243. [DOI: 10.1002/bies.10055]
Lorkovic, Z. J., Wieczorek Kirk, D. A. W., Lambermon, M. H. L., and Filipowicz, W. (2000) Pre-mRNA splicing in higher plants. Trends in Plant Science 5, 160-167. [DOI: 10.1016/S1360-1385(00)01595-8]
Lukaszewicz, M., Feuermann, M., Jerouville, B., Stas, A., and Boutry, M. (2000) In vivo evaluation of the context sequence of the translation initiation codon in plants. Plant Science 154, 89-98. [DOI: 10.1016/S0168-9452(00)00195-3]
Maier, R. M., Neckermann, K., Igloi, G. L., and Kossel, H. (1995) Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. Journal of Molecular Biology 251, 614-628. [PubMed: 7666415] [DOI: 10.1006/jmbi.1995.0460]
Miller, W. A., Waterhouse, P. M., Brown, J. W. S., and Browning, K. S. (2001) The RNA world in plants: post-transcriptional control III. Plant Cell 13, 1710-1717. [PubMed: 11487687] [DOI: 10.1105/tpc.13.8.1710]
Reinbothe, S., Mollenhauer, B., and Reinbothe, C. (1994) JIPS and RIPS: the regulation of gene expression by jasmonates in response to environmental cues and pathogens. Plant Cell 6, 1197-1209. [PubMed: 7919988] [DOI: 10.1105/tpc.6.9.1197]
Sawant, S. V., Kiran, K., Singh, P. K., and Tuli, R. (2001) Sequence architecture downstream of the initiator codon enhances gene expression and protein stability in plants. Plant Physiology 126, 1630-1636. [PubMed: 11500561] [DOI: 10.1104/pp.126.4.1630]
miRNA/siRNA/gene silencing
Jones-Rhoades, M. W., Bartel, D. P., and Bartel, B. (2006) MicroRNAs and their regulatory roles in plants. Annual Reviews in Plant Biology 57, 19-53. [DOI: 10.1146/annurev.arplant.57.032905.105218]
>Meins, F., Si-Ammour, A., and Blevins, T. (2005) RNA silencing systems and their relevance to plant development. Annual Reviews in Cell and Developmental Biology 21, 297-318. [DOI: 10.1146/annurev.cellbio.21.122303.114706]
Novina, C. D. and Sharp, P. A. (2004) The RNAi revolution. Nature 430, 161-164. [PubMed: 15241403] [DOI: 10.1038/430161a]
Willmann, M. R. and Poethig, R. S. (2007) Conservation and evolution of miRNA regulatory programmes in plant development. Current Opinion in Plant Biology 10, 1-8. [DOI: 10.1016/j.pbi.2007.07.004]
Genome-sequencing projects
Bevan, M., Mayer, K., White, O., Eisen, J. A., Preuss, D., Bureau, T., Salzberg, S. L., and Mewes, H.-W. (2001) Sequence and analysis of the Arabidopsis genome. Current Opinion in Plant Biology 4, 105-110. [PubMed: 11228431] [DOI: 10.1016/S1369-5266(00)00144-8]
Goff, S. A., Ricke, D., Lan, T.-H., Presting, G., Wang, R., Dunn, M., Glazebrook, J., Sessions, A., Oeller, P., Varma, H., Hadley, D., Hutchison, D., Martin, C., Katagiri, F., Lange, B. M., Moughamer, T., Xia, Y., Budworth, P., Zhong, J., Miguel, T., Paszkowski, U., Zhang, S., Colbert, M., Sun, W.-L., Chen, L., Cooper, B., Park, S., Wood, T. C., Mao, L., Quail, P., Wing, R., Dean, P., Yu, Y., Zharkikh, A., Shen, R., Sahasrabudhe, S., Thomas, A., Cannings, R., Gutin, A., Pruss, D., Reid, J., Tavtigian, S., Mitchell, J., Eldredge, G., Scholl, T., Miller, R. M., Bhatnagar, S., Adey, N., Rubano, T., Tusneem, N., Robinson, R., Feldhaus, J., Macalma, T., Oliphant, A., and Briggs, S. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp japonica). Science 296, 92-100. [PubMed: 11935018] [DOI: 10.1126/science.1068275]
International Rice Genome Sequencing Project (2004) The map-based sequence of the rice genome. Nature 436, 793-800. [DOI: 10.1038/nature03895]
The Arabidopsis Genome Initiative (2000) Sequence and analysis of the flowering plant Arabidopsis thaliana. Nature 408, 796-815. [DOI: 10.1038/35048692]
Yu, J., Hu, S., Wang, J., Wong, G. K.-S., Li, S., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., Cao, M., Liu, J., Sun, J., Tang, J., Chen, Y., Huang, X., Lin, W., Ye, C., Tong, W., Cong, L., Geng, J., Han, Y., Li, L., Li, W., Hu, G., Huang, X., Li, W., Li, J., Liu, Z., Li, L., Liu, J., Qi, Q., Liu, J., Li, L., Li, T., Wang, X., Lu, H., Wu, T., Zhu, M., Ni, P., Han, H., Dong, W., Ren, X., Feng, X., Cui, P., Li, X., Wang, H., Xu, X., Zhai, W., Xu, Z., Zhang, J., He, S., Zhang, J., Xu, J., Zhang, K., Zheng, X., Dong, J., Zeng, W., Tao, L., Ye, J., Tan, J., Ren, X., Chen, X., He, J., Liu, D., Tan, W., Tioan, C., Xia, H., Bao, Q., Li, G., Gao, H., Cao, T., Wang, J., Zhao, W., Li, P., Chen, W., Wang, X., Zhang, Y., Hu, J., Wang, J., Liu, S., Yang, J., Zhang, G., Xiong, Y., Li, Z., Mao, L., Zhou, C., Zhu, Z., Chen, R., Hao, B., Zheng, W., Chen, S., Guo, W., Li, G., Liu, S., Tao, M., Wang, J., Zhu, L., Yuan, L., and Yang, H. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp indica). Science 296, 79-92. [DOI: 10.1126/science.1068037]


