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Wolpert: Principles of Development 3e

Chapter 05

Development of Nematodes, Sea Urchins, Ascidians and Slime Molds

The nematode C. elegans is a fairly recent addition to the pantheon of model organisms, having been developed as an experimental system during the 1970s. One of its most attractive features was its invariant cell lineage: from the time the egg is fertilized, each cell's fate is known. This promised the opportunity to correlate genes, gene expression patterns, and cell-cell interactions with specification and determination at a level of resolution unavailable in any other organism. One of the important findings from this lineage work was that C. elegans, and organisms in general, make many more cells than they need, then get rid of the extra cells by programmed cell death, or apoptosis. The powerful genetics of C. elegans allowed the genes required for cell death (the "ced" genes) to be identified. The importance of the human counterparts to these same genes for understanding human cancer led to a Nobel Prize in 2002 for this work (http://nobelprize.org/). To learn more about the explorations into cell death during C. elegans development from one of the pioneers in the field, go to: www.dnalc.org/view/16041-Robert-Horvitz-1990

WormBase, http://www.wormbase.org/
contains resources for the biology and genome of Caenorhabditis elegans.

WormAtlas, http://www.wormatlas.org/
is a database of behavioral and structural anatomy of Caenorhabditis elegans.

RNAi Database, http://nematoda.bio.nyu.edu:8001/cgi-bin/index.cgi,
is where you can learn more about a new category of genes involved in development, microRNAs and how they function in gene silencing by preventing specific mRNA transcripts from being translated. The RNAi Database provides open access to all published RNAi experiments in C. elegans that have been deposited in WormBase, including data from the literature and published large-scale RNAi studies. RNAiDB is currently being developed and maintained by Philip MacMenamin and Kris Gunsalus at NYU's Center for Comparative Functional Genomics. Perform a simple phenotype search for “delayed P1 division” and identify published reports for this phenotype.

http://www.ciona.cnrs-gif.fr/
For a genomic and developmental tour of the ascidian Ciona intestinalis visit the Chordate Neural Development laboratory of Jean-Stephane Joly in France , where you will find a link to FABA, the Four-Dimensional Ascidian Body Atlas. Compare the developmental time table to the other model organisms studied and view the interactive cell lineage demonstration. From the information found in the atlas determine the characteristics of the notochord during development of Ciona.

http://dictybase.org/
DictyBase is the resource for the biology and genomics of the social amoeba Dictyostelium discoideum. View the time-lapse images of living cells and learn how gene expression influences morphogenetic movements. How do the pre-stalk cells behave during morphogenesis?

http://www.stanford.edu/group/Urchin/ and http://virtualurchin.stanford.edu/
The Sea Urchin Embryology and the Virtual Urchin websites from Stanford University provide a variety of laboratory resources for students, including ideas for experimentation and a series of “virtual labs”.

View the animations and videos to answer the following questions: