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Atkins & de Paula: Elements of Physical Chemistry 4e

Chapter 18

Databases
Software

Databases
 
CRC Handbook of Chemistry and Physics
http://www.hbcpnetbase.com/
Data on Polymer properties (section 13). Data may be accessed after purchasing a personal or institutional subscription.
 
Database of Macromolecular Movements 
http://molmovdb.org
A collection of movies describing motions in proteins and other macromolecules. Also available are freeware and server-based tools for structural analysis.
 
LIPIDAT
http://www.lipidat.chemistry.ohio-state.edu/
A database of thermodynamic properties of lipids.
Page 475
 
NDB
http://ndbserver.rutgers.edu/NDB/
A database of nucleic acid structures.
 
RCSB Protein Data Bank
http://www.rcsb.org/pdb
A database of structures of proteins obtained by X-ray diffraction or NMR spectroscopy.  For best viewing of the three-dimensional structures, install a molecular visualization plug-in (such as MDL Chime, Protein Explorer, or RasMol).
 
Software
 
CORINA
http://www2.chemie.uni-erlangen.de/software/corina/free_struct.html
Interactive molecule builder and energy minimizer.
 
MDL Chime
http://www.mdl.com/products/framework/chime/
A free browser plug-in for molecular visualization.
 
PredictProtein
http://www.embl-heidelberg.de/predictprotein/predictprotein.html
A web-based service for prediction of protein structures.
 
Protein Explorer
http://www.umass.edu/microbio/chime/pe/protexpl/frntdoor.htm
A free browser plug-in for molecular visualization, based on RasMol.
 
RasMol
http://www.umass.edu/microbio/rasmol/
A free browser plug-in for molecular visualization.