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Elliott & Elliott: Biochemistry and Molecular Biology 4e

Chapter 05

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X-ray crystallography

Hendrickson, W. A. (2000). Synchrotron crystallography. Trends Biochem. Sci., 25, 637-43 [DOI: 10.1016/S0968-0004(00)01721-7].

Mass spectrometry

Papayannopoulos, I. E. (1995). The interpretation of collision-induced dissociation tandem mass spectra of peptides. Mass Spectr. rev., 14, 49-73 [DOI: 10.1002/mas.1280140104].

Yates, J. R.. (2000). Mass spectrometry. From genomics to proteomics. Trends Genet., 16, 5-8 [DOI: 10.1016/S0168-9525(99)01879-X].
Covers large-scale DNA sequencing to protein-expression studies and the identification of proteins in complexes.

Wilm, M. (2000). Mass spectrometric analysis of proteins. Adv. Protein Chem., 53, 1-30 [DOI: 10.1016/S0065-3233(00)54001-7].
Advanced comprehensive review

Griffiths, W. J., et al. (2001). Electrospray and tandem mass spectrometry in biochemistry. Biochem. J., 355, 545-61.

Jonsson, A. P. (2001). Mass spectrometry for protein and peptide characterisation. Cell Mol. Life Sci., 58, 868-84 [DOI: 10.1007/PL00000907].

Mann, M., Hendrickson, R. C., and Pandey, A. (2001). Analysis of proteins and proteomes by mass spectrometry. Annu. Rev. Biochem., 70, 437-73 [DOI: 10.1146/annurev.biochem.70.1.437].
Advanced comprehensive review

Protein microarrays

Weinberger, S. R., Dalmasso, E. A., and Fung, E. T. (2001). Current achievements using ProteinChip® array technology. Curr. Opin. Chem. Biol., 6, 86-91 [DOI: 10.1016/S1367-5931(01)00282-4].

Schweitzer, B. and Kingsmore, S. F. (2002). Measuring proteins on microarrays. Curr. Opin. Biotechnol., 13, 14-19 [DOI: 10.1016/S0958-1669(02)00278-1].

Proteomics

Blobel, G. and Wozniak, R. W. (2000). Proteomics for the pore. Nature, 403, 835-6 [DOI: 10.1038/35002687] [PubMed: 10706261].
News and Views article describing work by Rout and colleagues which gives a complete structure of the nuclear pore.

Pandey, A. and Mann, M. (2000). Proteomics to study genes and genomes. Nature, 405, 837-46 [DOI: 10.1038/35015709] [PubMed: 10866210].

Maccoss, M. J. and Yates, J. R. (2001). Proteomics: analytical tools and techniques. Curr. Opin. Clin. Nutr. Metab. Care, 4, 369-75 [DOI: 10.1097/00075197-200109000-00006].

Martin, D. B. and Nelson, P. S. (2001). From genomics to proteomics: techniques and applications in cancer research. Trends Cell Biol., 11, S60-5 [DOI: 10.1016/S0962-8924(01)02123-7].

Moore, D. W. (2001). Bioinformatics: sequence and genome analysis. Cold Spring Harbor Laboratory Press.

Graves, P. R. and Haystead, T. A. (2002). Molecular biologist’s guide to proteomics. Microbiol. Mol. Biol. Rev., 66, 39-63 [DOI: 10.1128/MMBR.66.1.39-63.2002].

Petricoin, E. F., et al. (2002). Clinical proteomics: translating bench side promise into bedside reality. Nat. Rev. Drug Disc., 1, 683-95 [DOI: 10.1038/nrd891].

Rappsilber, J. and Mann, M. (2002). What does it mean to identify a protein in proteomics? Trends Biochem. Sci., 27, 74-8 [DOI: 10.1016/S0968-0004(01)02021-7].

Zhu, H., Bilgin, M., and Snyder, M. (2003). Proteomics. Annu. Rev. Biochem., 72, 783-812 [DOI: 10.1146/annurev.biochem.72.121801.161511].
An advanced review

Andersen, J. S., and Mann, M. (2006). Organellar proteomics: turning inventories into insights. EMBO Reports, 7, 874-9 [DOI: 10.1038/sj.embor.7400780] [PubMed: 16953200].
How mass spectrometry-based proteomics methods are being applied to organellar proteomics.