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Lesk: Introduction to Bioinformatics: 3e
Chapter 07
Genomics and proteomics
Tyers, M. and Mann, M. (2003). From genomics to proteomics. Nature, 422, 193-197. [DOI: 10.1038/nature01510]
Albert, R. and Barabási, A.-L. (2002). Statistical mechanics of complex networks. Reviews of Modern Physics, 74, 47-97. [DOI: 10.1103/RevModPhys.74.47]
Barabási, A.-L. (2003). Linked: How Everything is Connected to Everything Else and What it Means. Plume Press, New York.
Ideker, T. (2004). A systems approach to discovering signaling and regulatory pathways-or, how to digest large interaction networks into relevant pieces. Advances in Experimental Medicine and Biology, 547, 21-30. [PubMed: 15230090]
Babu, M.M., Luscombe, N.M., Aravind, L., Gerstein, M. and Teichmann, S.A. (2004). Structure and evolution of transcriptional regulatory networks. Current Opinion in Structural Biology, 14, 283-291. [PubMed: 15193307] [DOI: 10.1016/j.sbi.2004.05.004]
Bechhoefer, J. (2005). Feedback for physicists: a tutorial essay on control. Reviews of Modern Physics, 77, 783-836. [DOI: 10.1103/RevModPhys.77.783]
Phage λ
Ptashne, M. (2004). A Genetic Switch: Phage Lambda Revisited. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
Court, D.L., Oppenheim, A.B. and Adhya, S.L. (2007). A new look at bacteriophage λ genetic networks. Journal of Bacteriology, 198, 298-304.
Ptashne, M. (2005). Regulation of transcription: from lambda to eukaryotes. Trends in Biochemical Sciences, 30, 275-279. [DOI: 10.1016/j.tibs.2005.04.003]
Dodd, I.B., Shearwin, K.E and Egan, J.B. (2005). Revised gene regulation in bacteriophage λ. Current Opinion in Genetics and Development, 15, 145-152. [PubMed: 15797197] [DOI: 10.1016/j.gde.2005.02.001]