| BioPerl |
bio.perl.org |
A collection of software libraries for developers of Perl-based
life-science tools |
| CPAN |
www.cpan.org |
Perl modules, scripts, and documentation |
| ActiveState |
www.activestate.com |
Perl (and other languages) for Windows and Linux |
| MacPerl |
www.macperl.com |
For Macintosh OS 7.0 and later. Note that MacPerl runs as a
Classic environment on OS X, and that OS X comes with a native version of Perl that runs from the Unix
prompt |
| 2D illustraion of propsed relationship of Prostaglandin
H2 synthase to membrane |
blanco.biomol.uci.edu/MolGraph/1prh.html |
From the 'Membrane Proteins of Known 3D Structure' collection
of the Stephen White Laboratory at the University of California at Irvine |
| 'Average' composition of a protein sequence |
ca.expasy.org/tools/pscale/A.A.composition.html |
- |
| SVG |
www.adobe.com/svg/viewer/install/main.html |
This is the download site for the Adobe SVG Viewer, a web
browser plugin. It has links to more information |
| ChemML |
www.xml-cml.org |
Follow the "information" link for white papers and other
references |
| MathML |
www.w3.org/Math |
Includes links to tools and tutorials |
| MAGE-ML |
www.mged.org/Workgroups/MAGE/mage-ml.html |
A proposed standard data exchange format for microarray
expression experiments |
XSLT Processors
Saxon |
saxon.sourceforge.net |
A version called 'Instant Saxon' is partcularly convenient to install
on Windows machines. It uses the Microsoft Java Virtual Machine (JVM) that came with Internet Explorer,
so you do not have to bother with installing and configuring a JVM |
| Xalan |
xml.apache.org |
Cross-platform XSLT processor (written in Java) |
| NCBI Data in XML |
ftp://ftp.ncbi.nih.gov/toolbox/xml/ncbixml.txt |
Comparison of the ASN.1 format used to structure most NCBI
data with XML. Describes how one form is transliterated to the other |
| Creating a Bioinformatics Nation |
www.nature.com/nature/links/020509/020509-2.html |
Dr. Lincoln Stein's article prmoting a web services model for
bioinformatics resources |
| Beginning Perl for Bioinformatics, Chapter 10,
GenBank |
http://www.oreilly.com/catalog/begperlbio/chapter/ch10.html |
Parsing GenBank files |
| NCBI BLAST Home Page |
www.ncbi.nlm.nih.gov/BLAST/ |
See Chapter 2 for more information |
| XSL |
www.w3.org/Style/XSL/ |
Overview and links to the specifications |
| Free On-Line dictionary of computing |
wombat.doc.ic.ac.uk/foldoc |
See entries for 'Perl', 'CGI', 'scripting', etc. |
