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Companion Website
Sansom & Horton: Internet for Molecular Biologists
Chapter 04
| Name | Type | URL |
|---|---|---|
| Phred | Sequencing base-calling with quality information | http://www.genome.washington.edu/UWG C/analysistools/phred.htm |
| Phrap | Sequence assembly | http://www.genome.washington.edu/UWG C/analysistools/phrap.htm |
| Consed | Phrap's companion sequence assembly editor | http://www.genome.washington.edu/UWGC/analysistools/consed.htm |
| SWAT and CrossMatch | Sequence alignment tools | http://www.genome.washington.edu/UWGC/analysistools/swat.htm |
| TIGR assembler | Sequence assembly | http://www.tigr.org/softlab/assembler/ |
| StackPACK" | Sequence assembly | http://www.sanbi.ac.za/CODES/STACKPACK_REQUEST/ |
| Staden package | Sequence assembly | http://www.mrc-lmb.cam.ac.uk/pubseq/ |
| Genome databases ARS-GDR |
http://genome-ars.cornell.edu |
| National Genetic Resources Program (NGRP/Grin) | http://www.ars-grin.gov |
| NCBI | http://www.ncbi.nlm.nih.gov |
| TIGR | http://www.tigr.org |
| Plant genome project websites Clemson University Genomics Institute |
http://www.genome.clemson.edu |
| International Rice Functional Genomics Working Group | http://www.irri.org/genomics |
| Maize Genome Database | http://www.zmdb.iastate.edu |
| North American Barley Genome Project | http://www.css.orst.edu/Barley/nabgmp/nabgmp.htm |
| Rice Genome Research Project | http://rgp.dna.affrc.go.jp |
| US Wheat Genome Project | http://wheat.pw.usda.gov/NSF |
| Websites for major centers in plant biology Carnegie Institute of Washington |
http://www.ciw.edu |
| Cold Spring Harbor Laboratory | http://www.cshl.org |
| CIMMYT--International Maize and Wheat Improvement Center | http://www.cimmyt.mx |
| International Rice Research Institute (IRRI) | http://www.irri.org |
| Institute of Plant Genetics and Crop Plant Research | http://pgrc.ipk-gatersleben.de |
| John Innes Centre | http://www.jic.bbsrc.ac.uk |
| Scottish Crop Research Institute (SCRI) | http://www.scri.sari.ac.uk |
| Agricultural biotechnology and GMO-food resources Biotechnology-an information resource |
http://www.nal.usda.gov./bic |
| Council for Biotechnology Information | http://www.whybiotech.com |
| U.C. Berkeley Outreach | http://plantbio.Berkeley.edu/~outreach/ |
| U.C. Davis Biotechnology | http://ww.biotech.ucdavis.edu/ |
| Dupont Biotechnology | http://www.dupont.com/biotech |
| Monsanto | http://www.monstanto.com |
| Monsanto--food biotechnology in the UK | http://www.monsanto.co.uk |
| Union of Concerned Scientists | http://www.ucsusa.org |
| Plant biology education websites American Society of Plant Biologists (ASPB) Education Foundation |
http://www.aspb.org/education |
| Agricultural Library Kids' Science Page | http://www.nal.usda.gov/Kids |
| The Oregon Wolfe Barleys | http://www.css.orst.edu/barley/WOLFEBAR/WOLFNEW.HTM |
| Plant Breeding Updates | http://www.dessica.de.pbu |
| Other plant-related web resources Curtis Botanical Magazine |
http://www.nal.usda.gov/curtis |
| National Agricultural Library | http://www.nal.usda.gov |
| USDA | http://www.usda.gov |
| USDA plants database | http://www.usda.gov/plants |
| Vascular Plant Image Gallery | http:///www.csdl.tamu.edu/FLORA/gallery.htm |
| Wayne's Word of Unusual and Noteworthy Plants | http://waynesword.palomar.edu/worthypl.htm |
| Link Libraries National Agricultural Library |
|
| Plant Genome Information Resource | http://nal.usda.gov/pgdic/ |
| Bioinformatics Resources on the World Wide Web | http://sullivan.bu.edu/~mfrith/tools.shtml |
| The Plant Link Library | http://www.dpw.wageningen-ur.nl/links/ |